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Full information on isolate INF065 (id:6013)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id
6013
isolate
INF065
sender
Kat Holt, Melbourne U
curator
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update history
12 updates show details
date entered
2017-10-23
datestamp
2025-05-29
taxonomic designation
K. pneumoniae
phylogroup from ST
Kp1 (7 loci)
isolation year
2013
city
Melbourne
country
Australia
continent
Oceania
source type
Human
host
Human
source details
Unknown
accession number
ERR1023796

Sequence bin

method
Illumina
contigs
69
total length
5,498,118 bp
max length
472,330 bp
mean length
79,683 bp
N50
254,835
L50
8
N90
68,947
L90
25
N95
34,936
L95
30
%GC
57.18
Ns
112
gaps
90
loci tagged
3,431

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962899
Kpn_cgMLST2752273799

Similar isolates (determined by LIN codes)

Scheme
scgMLST629_S
LIN code
0_0_1524_0_0_0_0_0_0_0
Phylogroup
Kp1
Sublineage
SL11892
Clonal group
CG13469

Show all thresholds

PrefixThresholdMatching isolates
0_0_1524_0_0_071
0_0_1524_0_0_0_041
0_0_1524_0_0_0_0_021
0_0_1524_0_0_0_0_0_011
0_0_1524_0_0_0_0_0_0_001
061041312
0_058541312
0_0_15241902
0_0_1524_0431
0_0_1524_0_0101
0_0_1524_0_0_071
0_0_1524_0_0_0_041
0_0_1524_0_0_0_0_021
0_0_1524_0_0_0_0_0_011
0_0_1524_0_0_0_0_0_0_001

Schemes and loci

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Tools

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