Home About Us Contact What's New
Home>Organism>Klebsiella PasteurMLST>Isolate information
Help

Full information on isolate KSB1_9B (id:6011)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id
6011
isolate
KSB1_9B
sender
Kat Holt, Melbourne U
curator
Auto Tagger
update history
10 updates show details
date entered
2017-10-23
datestamp
2024-03-26
taxonomic designation
K. variicola
phylogroup from ST
Kp3 (7 loci)
isolation year
2013
city
Melbourne
country
Australia
continent
Oceania
source type
Human
host
Human
source details
Unknown
accession number
ERR1023724

Sequence bin

method
Illumina
contigs
43
total length
5,590,992 bp
max length
662,030 bp
mean length
130,024 bp
N50
320,400
L50
6
N90
105,766
L90
17
N95
61,358
L95
20
%GC
57.31
Ns
50
gaps
43
loci tagged
677

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962298

Similar isolates (determined by LIN codes)

Scheme
scgMLST629_S
LIN code
1_0_541_0_0_0_0_0_0_0
Phylogroup
Kp3
Sublineage
SL11891
Clonal group
CG13468

Show all thresholds

PrefixThresholdMatching isolates
1_0_541_0_0_071
1_0_541_0_0_0_041
1_0_541_0_0_0_0_021
1_0_541_0_0_0_0_0_011
1_0_541_0_0_0_0_0_0_001
16101702
1_05851584
1_0_5411901
1_0_541_0431
1_0_541_0_0101
1_0_541_0_0_071
1_0_541_0_0_0_041
1_0_541_0_0_0_0_021
1_0_541_0_0_0_0_0_011
1_0_541_0_0_0_0_0_0_001

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Third party:
Analysis: