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Full information on isolate KSB2_1D (id:6009)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
Gorrie et al. 2017
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients (PMID: 28369261)

Provenance/primary metadata

id
6009
isolate
KSB2_1D
sender
Kat Holt, Melbourne U
curator
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update history
10 updates show details
date entered
2017-10-23
datestamp
2024-03-26
taxonomic designation
K. variicola
phylogroup from ST
Kp3 (7 loci)
isolation year
2014
city
Melbourne
country
Australia
continent
Oceania
source type
Human
host
Human
source details
Unknown
accession number
ERR1023700

Sequence bin

method
Illumina
contigs
33
total length
5,381,287 bp
max length
1,599,665 bp
mean length
163,070 bp
N50
473,426
L50
4
N90
170,724
L90
10
N95
95,834
L95
12
%GC
57.63
Ns
80
gaps
68
loci tagged
676

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962198

Similar isolates (determined by LIN codes)

Scheme
scgMLST629_S
LIN code
1_0_544_0_0_0_0_0_0_0
Phylogroup
Kp3
Sublineage
SL11890
Clonal group
CG13467

Show all thresholds

PrefixThresholdMatching isolates
1_0_544_0_0_071
1_0_544_0_0_0_041
1_0_544_0_0_0_0_021
1_0_544_0_0_0_0_0_011
1_0_544_0_0_0_0_0_0_001
16101702
1_05851584
1_0_5441902
1_0_544_0431
1_0_544_0_0101
1_0_544_0_0_071
1_0_544_0_0_0_041
1_0_544_0_0_0_0_021
1_0_544_0_0_0_0_0_011
1_0_544_0_0_0_0_0_0_001

Schemes and loci

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Tools

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