Full information on isolate 198 (id:57208)
Provenance/primary metadata
- id
- 57208
- isolate
- 198
- sender
- Bruno Lopes, Teesside University, UK
- curator
- Auto Tagger
- update history
- 4 updates show details
- date entered
- 2023-07-19
- datestamp
- 2023-11-23
- taxonomic designation
- K. pneumoniae
- isolation year
- 2020
- city
- Aberdeen
- country
- UK [Scotland]
- continent
- Europe
- source type
- Human
- host
- Human
- source details
- Human
Sequence bin
- method
- Illumina
- contigs
- 12
- total length
- 5,562,484 bp
- max length
- 4,425,335 bp
- mean length
- 463,541 bp
- N50
- 4,425,335
- L50
- 1
- N90
- 185,951
- L90
- 3
- N95
- 119,867
- L95
- 4
- %GC
- 57.07
- Ns
- 0
- gaps
- 0
- loci tagged
- 689
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 629 | 100 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- virulence_score
- 1
- resistance_score
- 1
- num_resistance_classes
- 6
- num_resistance_genes
- 7
- Yersiniabactin
- ybt 14; ICEKp5
- YbST
- 376
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi7
- K_locus
- KL7
- K_type
- K7
- K_locus_problems
- none
- K_locus_confidence
- Very high
- K_locus_identity
- 98.54%
- O_locus
- O1/O2v1
- O_type
- O1
- O_locus_problems
- none
- O_locus_confidence
- Very high
- O_locus_identity
- 98.62%
- AGly_acquired
- strA.v1^;strB.v1
- Flq_acquired
- qnrB1.v2^
- Sul_acquired
- sul2
- Tmt_acquired
- dfrA14.v2*
- Bla_acquired
- TEM-1D.v1^
- Bla_ESBL_acquired
- CTX-M-15
- Bla_chr
- SHV-1
- ybtS
- 4
- ybtX
- 4
- ybtQ
- 5
- ybtP
- 4
- ybtA
- 1
- irp2
- 8
- irp1
- 8
- ybtU
- 2
- ybtT
- 4
- ybtE
- 4
- fyuA
- 2
Analysis performed: 2024-06-01; Kleborate v2.3.2
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 0_0_127_8_3_2_0_0_0_0
- Phylogroup
- Kp1
- Sublineage
- SL6
- Clonal group
- CG6
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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Analysis: