Full information on isolate SRR8071938 (id:45516)
Provenance/primary metadata
- id
- 45516
- isolate
- SRR8071938
- aliases
- GCID_KLEBC_00165; SAMN06218107
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Auto Tagger
- update history
- 4 updates show details
- date entered
- 2023-02-15
- datestamp
- 2023-04-17
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2013
- city
- Unknown
- country
- USA
- continent
- North America
- source type
- Human
- host
- Human
- source details
- Blood
Sequence bin
- contigs
- 105
- total length
- 5,810,486 bp
- max length
- 389,794 bp
- mean length
- 55,338 bp
- N50
- 140,632
- L50
- 13
- N90
- 40,140
- L90
- 41
- N95
- 20,582
- L95
- 51
- %GC
- 56.76
- Ns
- 98
- gaps
- 1
- loci tagged
- 689
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 629 | 100 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- virulence_score
- 0
- resistance_score
- 3
- num_resistance_classes
- 8
- num_resistance_genes
- 14
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi7
- K_locus
- KL7
- K_type
- K7
- K_locus_problems
- none
- K_locus_confidence
- Very high
- K_locus_identity
- 98.53%
- O_locus
- O1/O2v1
- O_type
- O2a
- O_locus_problems
- ?-
- O_locus_confidence
- Good
- O_locus_identity
- 98.61%
- O_locus_missing_genes
- O1/O2v1_06_wbbO
- AGly_acquired
- aac(6')-Ib'.v1*;aadA*;aadA5*;ant(2'')-Ia*;strA.v1^;strB.v1
- Phe_acquired
- floR.v2*
- Sul_acquired
- sul1;sul2
- Tmt_acquired
- dfrA14.v2*
- Bla_acquired
- OXA-2^;OXA-9.v1;TEM-1D.v1^
- Bla_Carb_acquired
- KPC-3
- Bla_chr
- SHV-1
- Col_mutations
- MgrB-6%
- Flq_mutations
- GyrA-83F;GyrA-87G;ParC-80I
Analysis performed: 2024-04-16; Kleborate v2.3.2
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 0_0_127_5_0_1_0_1_0_1
Schemes and loci
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Tools
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