Full information on isolate SRR7867328 (id:42499)
Provenance/primary metadata
- id
- 42499
- isolate
- SRR7867328
- aliases
- CRE24; SAMN10080388
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2023-02-15
- datestamp
- 2023-04-17
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2016
- city
- First affiliated hospital of jiamusi University
- country
- China
- continent
- Asia
- source type
- Human
- host
- Human
- source details
- Unknown
Sequence bin
- contigs
- 128
- total length
- 5,669,042 bp
- max length
- 390,645 bp
- mean length
- 44,290 bp
- N50
- 173,676
- L50
- 11
- N90
- 37,422
- L90
- 41
- N95
- 23,273
- L95
- 51
- %GC
- 57.14
- Ns
- 99
- gaps
- 1
- loci tagged
- 683
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 623 | 99 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- virulence_score
- 1
- resistance_score
- 2
- num_resistance_classes
- 8
- num_resistance_genes
- 12
- Yersiniabactin
- ybt 10; ICEKp4 (incomplete)
- YbST
- 384-1LV
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi100
- K_locus
- KL10
- K_type
- K10
- K_locus_problems
- none
- K_locus_confidence
- Very high
- K_locus_identity
- 96.75%
- O_locus
- O3/O3a
- O_type
- O3/O3a
- O_locus_problems
- none
- O_locus_confidence
- Very high
- O_locus_identity
- 97.98%
- AGly_acquired
- aac(3)-IIa.v1^;aac(6')-Ib-cr.v2;strA.v1^;strB.v1
- Flq_acquired
- qnrB1.v2^
- Phe_acquired
- CatB4.v1?
- Sul_acquired
- sul2
- Tmt_acquired
- dfrA14.v2*
- Bla_acquired
- OXA-1;TEM-1D.v1^
- Bla_ESBL_acquired
- CTX-M-15
- Bla_Carb_acquired
- KPC-2
- Bla_chr
- SHV-1^
- ybtS
- 16
- ybtX
- 12
- ybtQ
- 4
- ybtP
- 3
- ybtA
- 3
- irp2
- 61
- ybtU
- 3
- ybtT
- 10
- ybtE
- 9
- fyuA
- 39
- spurious_virulence_hits
- irp1_33*-0%;irp1_245*-44%
Analysis performed: 2024-04-12; Kleborate v2.3.2
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 0_0_46_5_20_0_0_2_0_0
Schemes and loci
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Tools
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