Home About Us Contact What's New
Home>Organism>Klebsiella PasteurMLST>Isolate information
Help

Full information on isolate CIP 52.145 (id:381)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
published_genomes
All isolates with published genome imported in BIGSdb, and validated for scgMLST_S study
Bialek et al 2014_EID
167 isolates from Bialek et al. in which the scgMLST-634 scheme was defined (PMID: 25341126)

Provenance/primary metadata

id
381
isolate
CIP 52.145
aliases
B 5055; SB3341
sender
Sylvain Brisse, Institut Pasteur, Paris, France
curator
Auto Tagger
update history
735 updates show details
date entered
2009-02-10
datestamp
2025-05-29
taxonomic designation
K. pneumoniae
phylogroup from ST
Kp1 (7 loci)
QC status
0000
isolation year
1935
city
Java
country
Indonesia
continent
Asia
source type
Human
host
Human
source details
Unknown
source lab
Institut Pasteur
K type
K2
K typing method
Antiserum
duplicate number
4
comments
K2 ref strain

Publications (3)

  • Bialek-Davenet S, Criscuolo A, Ailloud F, Passet V, Jones L, Delannoy-Vieillard AS, Garin B, Le Hello S, Arlet G, Nicolas-Chanoine MH, Decré D, Brisse S (2014). Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups. Emerg Infect Dis 20:1812-20
  • Blin C, Passet V, Touchon M, Rocha EPC, Brisse S (2017). Metabolic diversity of the emerging pathogenic lineages of Klebsiella pneumoniae. Environ Microbiol 19:1881-1898
  • Brisse S, Fevre C, Passet V, Issenhuth-Jeanjean S, Tournebize R, Diancourt L, Grimont P (2009). Virulent clones of Klebsiella pneumoniae: identification and evolutionary scenario based on genomic and phenotypic characterization. PLoS One 4:e4982

Sequence bin

method
Illumina
contigs
3
total length
5,656,097 bp
max length
5,439,142 bp
mean length
1,885,366 bp
N50
5,439,142
L50
1
N90
5,439,142
L90
1
N95
5,439,142
L95
1
%GC
57.09
Ns
4
gaps
3
loci tagged
6,860

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62961898
Kpn_cgMLST2752269097

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Klebsiella pneumoniae Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella > Klebsiella pneumoniae 100%

Analysis performed: 2022-11-02

Kleborate

species
Klebsiella pneumoniae
species_match
strong
QC_warnings
ambiguous_bases
YbST
315
Yersiniabactin
ybt 12; ICEKp10
ybtS
7
ybtX
1
ybtQ
1
ybtP
1
ybtA
1
irp2
3
irp1
13
ybtU
1
ybtT
1
ybtE
1
fyuA
1
CbST
9-1LV
Colibactin
clb 1
clbA
1
clbB
4
clbC
1
clbD
1
clbE
1
clbF
1
clbG
1*
clbH
5
clbI
1
clbL
1
clbM
1
clbN
1
clbO
1
clbP
1
clbQ
1
AbST
24
Aerobactin
iuc 2
iucA
2
iucB
6
iucC
5
iucD
6
iutA
8
SmST
22
Salmochelin
iro 2
iroB
4
iroC
9
iroD
5
iroN
4
RmST
2
RmpADC
rmp 2; KpVP-2
rmpA
9
rmpD
32
rmpC
5
virulence_score
5
resistance_score
0
num_resistance_classes
0
num_resistance_genes
0
Ciprofloxacin_prediction
wildtype S
Ciprofloxacin_profile_support
90.99% S (N=5168/5680)
Ciprofloxacin_profile
0^ QRDR, 0 PMQR, 0 aac(6`)-Ib-cr
Ciprofloxacin_MIC_prediction
0.25 mg/L [0.25-0.25]
wzi
wzi4
K_locus
KL2
K_type
K2
K_locus_confidence
Typeable
K_locus_problems
!
K_locus_identity
99.14%
O_locus
OL2α.2
O_type
O1αβ,2α
O_locus_confidence
Typeable
O_locus_problems
!
O_locus_identity
99.29%

Analysis performed: 2026-01-21; Kleborate v3.2.4

Similar isolates (determined by LIN codes)

Scheme
scgMLST629_S
LIN code
0_0_278_0_0_0_0_0_0_0
Phylogroup
Kp1
Sublineage
SL66
Clonal group
CG66

Show all thresholds

PrefixThresholdMatching isolates
0_0_278_0_0_072
0_0_278_0_0_0_042
0_0_278_0_0_0_0_022
0_0_278_0_0_0_0_0_012
0_0_278_0_0_0_0_0_0_002
061041312
0_058541312
0_0_27819028
0_0_278_04320
0_0_278_0_0102
0_0_278_0_0_072
0_0_278_0_0_0_042
0_0_278_0_0_0_0_022
0_0_278_0_0_0_0_0_012
0_0_278_0_0_0_0_0_0_002

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
klebs_species_v1.0scgMLST629_SSingle-linkage610experimental1 (16003 isolates)
klebs_subspecies_v1.0scgMLST629_SSingle-linkage585experimental1 (15951 isolates)
klebs_sublineage_v1.0scgMLST629_SSingle-linkage190experimental412 (11 isolates)
klebs_clonalgroup_v1.0scgMLST629_SSingle-linkage43experimental695 (10 isolates)
klebs_species_v1.0scgMLST629_SSingle-linkage610experimental1 (16003 isolates)
klebs_subspecies_v1.0scgMLST629_SSingle-linkage585experimental1 (15951 isolates)
klebs_sublineage_v1.0scgMLST629_SSingle-linkage190experimental412 (11 isolates)
klebs_clonalgroup_v1.0scgMLST629_SSingle-linkage43experimental695 (10 isolates)

Schemes and loci

Tools

Export:
Third party:
Analysis: