Full information on isolate SRR14402467 (id:35277)
Provenance/primary metadata
- id
- 35277
- isolate
- SRR14402467
- alias
- SAMN18977342
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2023-02-15
- datestamp
- 2023-04-17
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 0
- city
- Chicago, IL
- country
- USA
- continent
- North America
- source type
- Human
- host
- Human
- source details
- Unknown
Sequence bin
- contigs
- 80
- total length
- 5,510,936 bp
- max length
- 583,565 bp
- mean length
- 68,887 bp
- N50
- 252,011
- L50
- 8
- N90
- 45,287
- L90
- 25
- N95
- 26,723
- L95
- 33
- %GC
- 57.32
- Ns
- 895
- gaps
- 9
- loci tagged
- 686
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 626 | 99 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- virulence_score
- 0
- resistance_score
- 2
- num_resistance_classes
- 2
- num_resistance_genes
- 2
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi7
- K_locus
- KL7
- K_type
- K7
- K_locus_problems
- ?-
- K_locus_confidence
- Good
- K_locus_identity
- 98.52%
- K_locus_missing_genes
- KL7_08_wckC
- O_locus
- O1/O2v1
- O_type
- O1
- O_locus_problems
- none
- O_locus_confidence
- Very high
- O_locus_identity
- 98.62%
- Tmt_acquired
- dfrA14.v2*
- Bla_Carb_acquired
- KPC-3
- Bla_chr
- SHV-1
Analysis performed: 2024-04-11; Kleborate v2.3.2
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 0_0_127_10_7_0_0_0_0_0
| Prefix | Threshold | Matching isolates |
|---|---|---|
| 0_0_127_10_7_0 | 7 | 4 |
| 0_0_127_10_7_0_0 | 4 | 4 |
| 0_0_127_10_7_0_0_0 | 2 | 4 |
| 0_0_127_10_7_0_0_0_0 | 1 | 3 |
| 0_0_127_10_7_0_0_0_0_0 | 0 | 3 |
| 0 | 610 | 37874 |
| 0_0 | 585 | 37874 |
| 0_0_127 | 190 | 106 |
| 0_0_127_10 | 43 | 21 |
| 0_0_127_10_7 | 10 | 4 |
| 0_0_127_10_7_0 | 7 | 4 |
| 0_0_127_10_7_0_0 | 4 | 4 |
| 0_0_127_10_7_0_0_0 | 2 | 4 |
| 0_0_127_10_7_0_0_0_0 | 1 | 3 |
| 0_0_127_10_7_0_0_0_0_0 | 0 | 3 |
Schemes and loci
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Tools
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