Full information on isolate SRR11791361 (id:33157)
Provenance/primary metadata
- id
- 33157
- isolate
- SRR11791361
- aliases
- N19-01454; SAMN12732061
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Auto Tagger
- update history
- 5 updates show details
- date entered
- 2023-02-15
- datestamp
- 2023-04-17
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2018
- city
- Alberta
- country
- Canada
- continent
- North America
- source type
- Human
- host
- Human
- source details
- Blood
Sequence bin
- contigs
- 127
- total length
- 5,504,383 bp
- max length
- 640,377 bp
- mean length
- 43,342 bp
- N50
- 313,886
- L50
- 7
- N90
- 89,646
- L90
- 19
- N95
- 50,083
- L95
- 23
- %GC
- 57.23
- Ns
- 234
- gaps
- 6
- loci tagged
- 686
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 6 | 85 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 627 | 99 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- virulence_score
- 0
- resistance_score
- 1
- num_resistance_classes
- 2
- num_resistance_genes
- 5
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi100
- K_locus
- KL10
- K_type
- K10
- K_locus_problems
- ?-
- K_locus_confidence
- Good
- K_locus_identity
- 96.68%
- K_locus_missing_genes
- KL10_07_wbaP,KL10_19_manB
- O_locus
- O3/O3a
- O_type
- O3/O3a
- O_locus_problems
- ?-
- O_locus_confidence
- Good
- O_locus_identity
- 97.94%
- O_locus_missing_genes
- O3/O3a_02_manB
- AGly_acquired
- aac(3)-IId^;aac(6')-Ib'.v1;aadA*
- Bla_ESBL_acquired
- CTX-M-3;SHV-12
- SHV_mutations
- 238S;240K;35Q
- truncated_resistance_hits
- OXA-9.v1*-42%
- spurious_resistance_hits
- TEM-105?-0%
Analysis performed: 2024-04-05; Kleborate v2.3.2
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 0_0_46_5_9_0_0_0_0_0
Schemes and loci
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Tools
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