Full information on isolate DRR065613 (id:28538)
Provenance/primary metadata
- id
- 28538
- isolate
- DRR065613
- alias
- SAMD00055767
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
- update history
- 7 updates show details
- date entered
- 2023-02-15
- datestamp
- 2024-06-03
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2011
- city
- Unknown
- country
- Italy
- continent
- Europe
- source type
- Human
- host
- Human
- source details
- Unknown
Sequence bin
- contigs
- 119
- total length
- 5,715,754 bp
- max length
- 487,176 bp
- mean length
- 48,032 bp
- N50
- 180,477
- L50
- 10
- N90
- 59,086
- L90
- 28
- N95
- 23,809
- L95
- 36
- %GC
- 57.04
- Ns
- 780
- gaps
- 8
- loci tagged
- 689
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 626 | 99 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- virulence_score
- 0
- resistance_score
- 2
- num_resistance_classes
- 6
- num_resistance_genes
- 8
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi7
- K_locus
- KL7
- K_type
- K7
- K_locus_problems
- none
- K_locus_confidence
- Very high
- K_locus_identity
- 98.53%
- O_locus
- O1/O2v1
- O_type
- O1
- O_locus_problems
- none
- O_locus_confidence
- Very high
- O_locus_identity
- 98.61%
- AGly_acquired
- aac(6')-Ib4^;aadA1.v1^;aphA15
- MLS_acquired
- mphA
- Phe_acquired
- catB2.v1
- Sul_acquired
- sul1
- Tmt_acquired
- dfrA14.v2*
- Bla_Carb_acquired
- VIM-1
- truncated_resistance_hits
- SHV-11.v2*?-0%
Analysis performed: 2024-03-26; Kleborate v2.3.2
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 0_0_127_4_2_0_0_0_0_0
Schemes and loci
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Tools
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