Full information on isolate ERR4635182 (id:26001)
Provenance/primary metadata
- id
- 26001
- isolate
- ERR4635182
- aliases
- 15ars-mmh278; G18761206; SAMEA5758462
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
- update history
- 7 updates show details
- date entered
- 2023-02-15
- datestamp
- 2024-06-03
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2015
- city
- Bacolod City; VI/Negros Occidental
- country
- Philippines
- continent
- Asia
- source type
- Human
- host
- Human
- source details
- Blood
Sequence bin
- contigs
- 109
- total length
- 5,343,943 bp
- max length
- 402,392 bp
- mean length
- 49,027 bp
- N50
- 144,793
- L50
- 12
- N90
- 33,345
- L90
- 39
- N95
- 18,679
- L95
- 50
- %GC
- 57.38
- Ns
- 484
- gaps
- 5
- loci tagged
- 691
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 628 | 99 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- virulence_score
- 0
- resistance_score
- 1
- num_resistance_classes
- 3
- num_resistance_genes
- 3
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi7
- K_locus
- KL7
- K_type
- K7
- K_locus_problems
- ?
- K_locus_confidence
- Good
- K_locus_identity
- 98.53%
- O_locus
- O1/O2v1
- O_type
- O1
- O_locus_problems
- none
- O_locus_confidence
- Very high
- O_locus_identity
- 98.62%
- Flq_acquired
- qnrS1
- Tmt_acquired
- dfrA14.v2*
- Bla_ESBL_acquired
- SHV-12
- SHV_mutations
- 238S;240K;35Q
- spurious_resistance_hits
- TEM-117*?-0%
Analysis performed: 2024-03-26; Kleborate v2.3.2
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 0_0_127_1_2_0_0_0_0_0
Schemes and loci
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Tools
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