Full information on isolate ERR4635159 (id:25896)
Provenance/primary metadata
- id
- 25896
- isolate
- ERR4635159
- aliases
- 17ars-nmc0224; G18755704; SAMEA5758655
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Auto Tagger
- update history
- 9 updates show details
- date entered
- 2023-02-15
- datestamp
- 2025-05-29
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2017
- city
- Cagayan de Oro City; X/Misamis Oriental
- country
- Philippines
- continent
- Asia
- source type
- Human
- host
- Human
- source details
- Cerebrospinal fluid
Sequence bin
- method
- Unknown
- contigs
- 131
- total length
- 5,458,089 bp
- max length
- 454,819 bp
- mean length
- 41,665 bp
- N50
- 182,268
- L50
- 11
- N90
- 33,313
- L90
- 41
- N95
- 14,867
- L95
- 53
- %GC
- 57.31
- Ns
- 591
- gaps
- 6
- loci tagged
- 3,404
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 625 | 99 | |
| Kpn_cgMLST | 2752 | 2716 | 98 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- virulence_score
- 0
- AGly_acquired
- aac(3)-IId^;strB.v1;aadA16*;strA.v1^;aac(6')-Ib-cr.v2
- Flq_acquired
- qnrB6^;aac(6')-Ib-cr.v2
- MLS_acquired
- Mrx;mphA
- Phe_acquired
- catII.2*
- Rif_acquired
- arr-3
- Sul_acquired
- sul1;sul1;sul2*
- Tmt_acquired
- dfrA27
- Bla_ESBL_acquired
- CTX-M-15
- Bla_chr
- SHV-1^
- resistance_score
- 1
- num_resistance_classes
- 9
- num_resistance_genes
- 17
- Ciprofloxacin_prediction
- nonwildtype R
- Ciprofloxacin_profile_support
- 94.63% R (N=776/820)
- Ciprofloxacin_profile
- 0 QRDR, 1 PMQR, 1 aac(6`)-Ib-cr
- Ciprofloxacin_MIC_prediction
- 2 mg/L [1-2]
- wzi
- wzi27
- K_locus
- KL27
- K_type
- K27
- K_locus_confidence
- Typeable
- K_locus_problems
- ?2
- K_locus_identity
- 99.91%
- O_locus
- OL2α.1
- O_type
- O1αβ,2α
- O_locus_confidence
- Typeable
- O_locus_identity
- 99.05%
Analysis performed: 2026-01-15; Kleborate v3.2.4
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 0_0_423_3_0_0_0_0_0_0
- Phylogroup
- Kp1
- Sublineage
- SL1916
- Clonal group
- CG12564
Schemes and loci
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Tools
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