Full information on isolate DRR320065 (id:25106)
Provenance/primary metadata
- id
- 25106
- isolate
- DRR320065
- alias
- SAMD00399279
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Auto Tagger
- update history
- 6 updates show details
- date entered
- 2023-02-15
- datestamp
- 2023-11-27
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2016
- city
- Osaka
- country
- Japan
- continent
- Asia
- source type
- Human
- host
- Human
- source details
- Unknown
Sequence bin
- contigs
- 125
- total length
- 5,193,459 bp
- max length
- 292,042 bp
- mean length
- 41,548 bp
- N50
- 74,542
- L50
- 19
- N90
- 22,657
- L90
- 65
- N95
- 16,027
- L95
- 79
- %GC
- 57.42
- Ns
- 298
- gaps
- 3
- loci tagged
- 683
Assembly checks
Check | Status | Warn/fail reason |
---|---|---|
Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Annotation quality metrics
Scheme completion
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
MLST | 7 | 7 | 100 | |
Ribosomal MLST | 53 | 52 | 98 | |
scgMLST629_S | 629 | 621 | 98 |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- virulence_score
- 0
- resistance_score
- 0
- num_resistance_classes
- 7
- num_resistance_genes
- 8
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi100
- K_locus
- KL10
- K_type
- K10
- K_locus_problems
- ?-+
- K_locus_confidence
- Good
- K_locus_identity
- 96.71%
- K_locus_missing_genes
- KL10_18_manC,KL10_19_manB
- O_locus
- O3/O3a
- O_type
- O3/O3a
- O_locus_problems
- ?-
- O_locus_confidence
- Good
- O_locus_identity
- 97.93%
- O_locus_missing_genes
- O3/O3a_01_manC,O3/O3a_02_manB
- AGly_acquired
- aadA2
- Flq_acquired
- qnrS1
- Phe_acquired
- catA1^
- Sul_acquired
- sul1
- Tet_acquired
- tet(A).v1;tet(C)
- Tmt_acquired
- dfrA1.v1
- Bla_acquired
- CARB-2.v1^
- Bla_chr
- SHV-1^
Analysis performed: 2024-03-26; Kleborate v2.3.2
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 0_0_46_5_13_0_0_0_0_0
Schemes and loci
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Tools
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