Full information on isolate DRR281048 (id:25009)
Provenance/primary metadata
- id
- 25009
- isolate
- DRR281048
- alias
- SAMD00287374
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
- update history
- 7 updates show details
- date entered
- 2023-02-15
- datestamp
- 2024-06-03
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2018
- city
- Fukuoka
- country
- Japan
- continent
- Asia
- source type
- Human
- host
- Human
- source details
- Unknown
Sequence bin
- contigs
- 66
- total length
- 5,300,579 bp
- max length
- 441,835 bp
- mean length
- 80,312 bp
- N50
- 248,674
- L50
- 8
- N90
- 45,776
- L90
- 25
- N95
- 33,277
- L95
- 32
- %GC
- 57.44
- Ns
- 395
- gaps
- 4
- loci tagged
- 690
Assembly checks
Check | Status | Warn/fail reason |
---|---|---|
Number of contigs | ||
Assembly size | ||
Minimum N50 | ||
%GC |
Annotation quality metrics
Scheme completion
Scheme | Scheme loci | Designated loci | Annotation | |
---|---|---|---|---|
Score | Status | |||
MLST | 7 | 7 | 100 | |
Ribosomal MLST | 53 | 53 | 100 | |
scgMLST629_S | 629 | 627 | 99 |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- virulence_score
- 0
- resistance_score
- 0
- num_resistance_classes
- 0
- num_resistance_genes
- 0
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi7
- K_locus
- KL7
- K_type
- K7
- K_locus_problems
- ?
- K_locus_confidence
- Good
- K_locus_identity
- 98.54%
- O_locus
- O1/O2v1
- O_type
- O1
- O_locus_problems
- none
- O_locus_confidence
- Very high
- O_locus_identity
- 98.62%
- Bla_chr
- SHV-1
Analysis performed: 2024-03-26; Kleborate v2.3.2
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 0_0_127_10_5_0_0_0_0_0
Prefix | Threshold | Matching isolates |
---|---|---|
0_0_127_10_5_0 | 7 | 1 |
0_0_127_10_5_0_0 | 4 | 1 |
0_0_127_10_5_0_0_0 | 2 | 1 |
0_0_127_10_5_0_0_0_0 | 1 | 1 |
0_0_127_10_5_0_0_0_0_0 | 0 | 1 |
0 | 610 | 37702 |
0_0 | 585 | 37702 |
0_0_127 | 190 | 105 |
0_0_127_10 | 43 | 20 |
0_0_127_10_5 | 10 | 1 |
0_0_127_10_5_0 | 7 | 1 |
0_0_127_10_5_0_0 | 4 | 1 |
0_0_127_10_5_0_0_0 | 2 | 1 |
0_0_127_10_5_0_0_0_0 | 1 | 1 |
0_0_127_10_5_0_0_0_0_0 | 0 | 1 |
Schemes and loci
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Tools
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