Full information on isolate DRR281048 (id:25009)
Provenance/primary metadata
- id
- 25009
- isolate
- DRR281048
- alias
- SAMD00287374
- sender
- Sebastien Bridel, Institut Pasteur, Paris, France
- curator
- Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
- update history
- 7 updates show details
- date entered
- 2023-02-15
- datestamp
- 2024-06-03
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2018
- city
- Fukuoka
- country
- Japan
- continent
- Asia
- source type
- Human
- host
- Human
- source details
- Unknown
Sequence bin
- method
- Unknown
- contigs
- 66
- total length
- 5,300,579 bp
- max length
- 441,835 bp
- mean length
- 80,312 bp
- N50
- 248,674
- L50
- 8
- N90
- 45,776
- L90
- 25
- N95
- 33,277
- L95
- 32
- %GC
- 57.44
- Ns
- 395
- gaps
- 4
- loci tagged
- 690
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 627 | 99 | |
Analysis
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- QC_warnings
- ambiguous_bases
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- virulence_score
- 0
- Bla_chr
- SHV-1
- resistance_score
- 0
- num_resistance_classes
- 0
- num_resistance_genes
- 0
- Ciprofloxacin_prediction
- wildtype S
- Ciprofloxacin_profile_support
- 90.99% S (N=5168/5680)
- Ciprofloxacin_profile
- 0^ QRDR, 0 PMQR, 0 aac(6`)-Ib-cr
- Ciprofloxacin_MIC_prediction
- 0.25 mg/L [0.25-0.25]
- wzi
- wzi7
- K_locus
- KL7
- K_type
- K7
- K_locus_confidence
- Typeable
- K_locus_problems
- ?2
- K_locus_identity
- 99.52%
- O_locus
- OL2α.1
- O_type
- O1αβ,2α
- O_locus_confidence
- Typeable
- O_locus_identity
- 99.43%
Analysis performed: 2026-01-15; Kleborate v3.2.4
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 0_0_127_10_5_0_0_0_0_0
- Phylogroup
- Kp1
- Sublineage
- SL6
- Clonal group
- CG10691
| Prefix | Threshold | Matching isolates |
|---|---|---|
| 0_0_127_10_5_0 | 7 | 1 |
| 0_0_127_10_5_0_0 | 4 | 1 |
| 0_0_127_10_5_0_0_0 | 2 | 1 |
| 0_0_127_10_5_0_0_0_0 | 1 | 1 |
| 0_0_127_10_5_0_0_0_0_0 | 0 | 1 |
| 0 | 610 | 41312 |
| 0_0 | 585 | 41312 |
| 0_0_127 | 190 | 121 |
| 0_0_127_10 | 43 | 23 |
| 0_0_127_10_5 | 10 | 1 |
| 0_0_127_10_5_0 | 7 | 1 |
| 0_0_127_10_5_0_0 | 4 | 1 |
| 0_0_127_10_5_0_0_0 | 2 | 1 |
| 0_0_127_10_5_0_0_0_0 | 1 | 1 |
| 0_0_127_10_5_0_0_0_0_0 | 0 | 1 |
Schemes and loci
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Tools
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