Full information on isolate NMI4379/16 (id:22995)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 22995
- isolate
- NMI4379/16
- sender
- Radek Izdebski, National Medecines Institute Chelmska 30/34 00-725 Warsaw, Poland
- curator
- Auto Tagger
- update history
- 3 updates show details
- date entered
- 2023-01-16
- datestamp
- 2023-11-26
- taxonomic designation
- K. pneumoniae
- isolation year
- 2016
- city
- Wrocław
- country
- Poland
- continent
- Europe
- source type
- Human
- host
- human
- source details
- rectal swab
Sequence bin
- contigs
- 168
- total length
- 5,669,144 bp
- max length
- 934,467 bp
- mean length
- 33,745 bp
- N50
- 343,997
- L50
- 6
- N90
- 37,220
- L90
- 20
- N95
- 19,037
- L95
- 31
- %GC
- 57.15
- Ns
- 0
- gaps
- 0
- loci tagged
- 674
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 612 | 97 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Klebsiella pneumoniae | Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella > Klebsiella pneumoniae | 100% |
Analysis performed: 2023-01-17
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- virulence_score
- 0
- resistance_score
- 2
- num_resistance_classes
- 9
- num_resistance_genes
- 17
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi100
- K_locus
- KL10
- K_type
- K10
- K_locus_problems
- ?-
- K_locus_confidence
- Good
- K_locus_identity
- 96.69%
- K_locus_missing_genes
- KL10_19_manB
- O_locus
- O3/O3a
- O_type
- O3/O3a
- O_locus_problems
- ?-
- O_locus_confidence
- Good
- O_locus_identity
- 97.94%
- O_locus_missing_genes
- O3/O3a_02_manB
- AGly_acquired
- aac(6')-Ib4^;aadA1.v1^;aadA16*;aphA15;strA.v1*;strB.v1*
- Flq_acquired
- qnrB6^;qnrS1
- MLS_acquired
- mphA
- Phe_acquired
- catB2.v1
- Rif_acquired
- arr-3
- Sul_acquired
- sul1;sul2
- Tet_acquired
- tet(A).v1*
- Tmt_acquired
- dfrA14.v2*;dfrA27
- Bla_Carb_acquired
- VIM-1
- spurious_resistance_hits
- SHV-129?-0%;aac(6')-Ib-Suzhou*?-0%
Analysis performed: 2024-03-23; Kleborate v2.3.2
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 0_0_46_5_0_1_0_1_0_0
Schemes and loci
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Tools
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Analysis: