Full information on isolate ICf10Mc4 (id:21924)
Provenance/primary metadata
- id
- 21924
- isolate
- ICf10Mc4
- sender
- Tomohiro Denda, Shinshu University Graduate School of Medicine Health and Medical Sciences, Japon
- curator
- Auto Tagger
- update history
- 8 updates show details
- date entered
- 2022-05-07
- datestamp
- 2023-01-23
- taxonomic designation
- K. quasipneumoniae subsp. similipneumoniae
- QC status
- 0000
- isolation year
- 2021
- city
- Matsumoto
- country
- Japan
- continent
- Asia
- source type
- Environment
- host
- Environment
- source details
- municipal wastewater
Sequence bin
- contigs
- 136
- total length
- 5,473,385 bp
- max length
- 331,215 bp
- mean length
- 40,246 bp
- N50
- 155,466
- L50
- 13
- N90
- 30,061
- L90
- 44
- N95
- 19,489
- L95
- 55
- %GC
- 57.56
- Ns
- 0
- gaps
- 0
- loci tagged
- 676
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 608 | 96 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Klebsiella quasipneumoniae | Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella > Klebsiella quasipneumoniae | 100% |
Analysis performed: 2022-12-06
Kleborate
- species
- Klebsiella quasipneumoniae subsp. similipneumoniae
- species_match
- strong
- virulence_score
- 0
- resistance_score
- 2
- num_resistance_classes
- 5
- num_resistance_genes
- 5
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi162
- K_locus
- KL140
- K_type
- unknown (KL140)
- K_locus_problems
- ?-
- K_locus_confidence
- Good
- K_locus_identity
- 99.62%
- K_locus_missing_genes
- KL140_07_wzy
- O_locus
- O3b
- O_type
- O3b
- O_locus_problems
- none
- O_locus_confidence
- Very high
- O_locus_identity
- 99.01%
- AGly_acquired
- aac(6')-Ib'.v2*;aadA2
- Sul_acquired
- sul1
- Bla_acquired
- OXA-129
- Bla_Carb_acquired
- GES-24*
- Bla_chr
- OKP-B-9*
- Omp_mutations
- OmpK35-38%
- Flq_mutations
- GyrA-83Y
Analysis performed: 2024-03-22; Kleborate v2.3.2
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| klebs_species_v1.0 | scgMLST629_S | Single-linkage | 610 | experimental | 1 (13437 isolates) |
| klebs_subspecies_v1.0 | scgMLST629_S | Single-linkage | 585 | experimental | 1 (13416 isolates) |
| klebs_sublineage_v1.0 | scgMLST629_S | Single-linkage | 190 | experimental | 42 (9 isolates) |
| klebs_species_v1.0 | scgMLST629_S | Single-linkage | 610 | experimental | 1 (13437 isolates) |
| klebs_subspecies_v1.0 | scgMLST629_S | Single-linkage | 585 | experimental | 1 (13416 isolates) |
| klebs_sublineage_v1.0 | scgMLST629_S | Single-linkage | 190 | experimental | 42 (9 isolates) |
| klebs_clonalgroup_v1.0 | scgMLST629_S | Single-linkage | 43 | experimental | 2445 (1 isolate) |
Schemes and loci
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Tools
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