Home About Us Contact What's New
Home>Organism>Klebsiella PasteurMLST>Isolate information
Help

Full information on isolate K45-67 (id:213)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
published_genomes
All isolates with published genome imported in BIGSdb, and validated for scgMLST_S study

Provenance/primary metadata

id
213
isolate
K45-67
sender
Christian Giske, Karolinska University Hospital, Solna, Sweden
curator
Audrey Combary, Institut Pasteur, Paris, France (E-mail: audrey.combary@pasteur.fr)
update history
28 updates show details
date entered
2008-09-05
datestamp
2025-07-18
taxonomic designation
K. pneumoniae
phylogroup from ST
Kp1 (7 loci)
QC status
0000
isolation year
2007
city
Tromso
country
Norway
continent
Europe
source type
Human
host
Human
source details
Unknown

Publication (1)

  • Samuelsen Ø, Toleman MA, Hasseltvedt V, Fuursted K, Leegaard TM, Walsh TR, Sundsfjord A, Giske CG (2011). Molecular characterization of VIM-producing Klebsiella pneumoniae from Scandinavia reveals genetic relatedness with international clonal complexes encoding transferable multidrug resistance. Clin Microbiol Infect 17:1811-6

Sequence bin

method
Unknown
contigs
417
total length
5,415,345 bp
max length
282,129 bp
mean length
12,987 bp
N50
70,221
L50
23
N90
9,619
L90
111
N95
5,014
L95
149
%GC
57.14
Ns
0
gaps
0
loci tagged
7,649

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62960996
SL147_cgMLST85283097
SL307_cgMLST94764367
Kpn_cgMLST2752267797

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Klebsiella pneumoniae Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella > Klebsiella pneumoniae 100%

Analysis performed: 2022-11-02

Kleborate

species
Klebsiella pneumoniae
species_match
strong
YbST
0
CbST
0
AbST
0
SmST
0
RmST
0
virulence_score
0
AGly_acquired
strB.v1;aph3-Ia.v1^;strA.v1;aadA2^
MLS_acquired
Mrx;mphA
Phe_acquired
catII.2*
Sul_acquired
sul1
Tmt_acquired
dfrA12;dfrA14.v2*
Bla_Carb_acquired
VIM-1
Flq_mutations
GyrA:p.Ser83Ile;ParC:p.Ser80Ile
truncated_resistance_hits
aac(6')-Ib-cr4*-11%;qnrS1?-87%
spurious_resistance_hits
SHV-12?-0%
resistance_score
2
num_resistance_classes
7
num_resistance_genes
11
Ciprofloxacin_prediction
nonwildtype R
Ciprofloxacin_profile_support
99.21% R (N=2147/2167)
Ciprofloxacin_profile
>1 QRDR, 0 PMQR, * aac(6`)-Ib-cr
Ciprofloxacin_MIC_prediction
2 mg/L [2-4]
wzi
wzi174
K_locus
KL74
K_type
K74
K_locus_confidence
Typeable
K_locus_problems
?3
K_locus_identity
99.42%
O_locus
OL15
O_type
unknown (OL15)
O_locus_confidence
Typeable
O_locus_problems
?3
O_locus_identity
96.04%

Analysis performed: 2026-01-15; Kleborate v3.2.4

Similar isolates (determined by LIN codes)

Scheme
scgMLST629_S
LIN code
0_0_197_0_0_0_0_0_0_0
Phylogroup
Kp1
Sublineage
SL147
Clonal group
CG147

Show all thresholds

PrefixThresholdMatching isolates
0_0_197_0_0_07106
0_0_197_0_0_0_0443
0_0_197_0_0_0_0_024
0_0_197_0_0_0_0_0_013
0_0_197_0_0_0_0_0_0_003
061041312
0_058541312
0_0_1971902451
0_0_197_0432414
0_0_197_0_010132
0_0_197_0_0_07106
0_0_197_0_0_0_0443
0_0_197_0_0_0_0_024
0_0_197_0_0_0_0_0_013
0_0_197_0_0_0_0_0_0_003

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
klebs_species_v1.0scgMLST629_SSingle-linkage610experimental1 (16003 isolates)
klebs_subspecies_v1.0scgMLST629_SSingle-linkage585experimental1 (15951 isolates)
klebs_sublineage_v1.0scgMLST629_SSingle-linkage190experimental50 (758 isolates)
klebs_clonalgroup_v1.0scgMLST629_SSingle-linkage43experimental51 (750 isolates)
klebs_threshold10_v1.0scgMLST629_SSingle-linkage10experimental347 (18 isolates)
klebs_threshold7_v1.0scgMLST629_SSingle-linkage7experimental273 (13 isolates)
klebs_threshold4_v1.0scgMLST629_SSingle-linkage4experimental668 (7 isolates)
klebs_threshold2_v1.0scgMLST629_SSingle-linkage2experimental2083 (3 isolates)
klebs_threshold1_v1.0scgMLST629_SSingle-linkage1experimental2429 (3 isolates)
klebs_threshold0_v1.0scgMLST629_SSingle-linkage0experimental2957 (3 isolates)
klebs_species_v1.0scgMLST629_SSingle-linkage610experimental1 (16003 isolates)
klebs_subspecies_v1.0scgMLST629_SSingle-linkage585experimental1 (15951 isolates)
klebs_sublineage_v1.0scgMLST629_SSingle-linkage190experimental50 (758 isolates)
klebs_clonalgroup_v1.0scgMLST629_SSingle-linkage43experimental51 (750 isolates)
klebs_threshold10_v1.0scgMLST629_SSingle-linkage10experimental347 (18 isolates)
klebs_threshold7_v1.0scgMLST629_SSingle-linkage7experimental273 (13 isolates)
klebs_threshold4_v1.0scgMLST629_SSingle-linkage4experimental668 (7 isolates)
klebs_threshold2_v1.0scgMLST629_SSingle-linkage2experimental2083 (3 isolates)
klebs_threshold1_v1.0scgMLST629_SSingle-linkage1experimental2429 (3 isolates)
klebs_threshold0_v1.0scgMLST629_SSingle-linkage0experimental2957 (3 isolates)

Schemes and loci

Tools

Export:
Third party:
Analysis: