Full information on isolate 14KE (id:18581)
Provenance/primary metadata
- id
- 18581
- isolate
- 14KE
- sender
- Hisham Altayb, King Abdulaziz university
- curator
- Auto Tagger
- update history
- 9 updates show details
- date entered
- 2021-12-07
- datestamp
- 2023-01-22
- taxonomic designation
- K. quasipneumoniae subsp. similipneumoniae
- QC status
- 0000
- isolation year
- 2021
- city
- Khartoum
- country
- Sudan
- continent
- Africa
- source type
- Environment
- host
- Tables
- source details
- Tables surface
Sequence bin
- contigs
- 393
- total length
- 5,362,481 bp
- max length
- 132,003 bp
- mean length
- 13,645 bp
- N50
- 39,731
- L50
- 40
- N90
- 10,663
- L90
- 132
- N95
- 5,937
- L95
- 166
- %GC
- 57.75
- Ns
- 0
- gaps
- 0
- loci tagged
- 688
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 599 | 95 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Klebsiella quasipneumoniae | Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella > Klebsiella quasipneumoniae | 100% |
Analysis performed: 2022-11-02
Kleborate
- species
- Klebsiella quasipneumoniae subsp. similipneumoniae
- species_match
- strong
- virulence_score
- 0
- resistance_score
- 0
- num_resistance_classes
- 0
- num_resistance_genes
- 0
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- wzi
- wzi213
- K_locus
- KL166
- K_type
- unknown (KL166)
- K_locus_problems
- ?*
- K_locus_confidence
- Good
- K_locus_identity
- 95.92%
- O_locus
- O3/O3a
- O_type
- O3/O3a
- O_locus_problems
- ?
- O_locus_confidence
- Good
- O_locus_identity
- 95.98%
- Bla_chr
- OKP-B-9*
Analysis performed: 2024-03-22; Kleborate v2.3.2
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| klebs_species_v1.0 | scgMLST629_S | Single-linkage | 610 | experimental | 1 (13437 isolates) |
| klebs_subspecies_v1.0 | scgMLST629_S | Single-linkage | 585 | experimental | 1 (13416 isolates) |
| klebs_sublineage_v1.0 | scgMLST629_S | Single-linkage | 190 | experimental | 42 (9 isolates) |
| klebs_species_v1.0 | scgMLST629_S | Single-linkage | 610 | experimental | 1 (13437 isolates) |
| klebs_subspecies_v1.0 | scgMLST629_S | Single-linkage | 585 | experimental | 1 (13416 isolates) |
| klebs_sublineage_v1.0 | scgMLST629_S | Single-linkage | 190 | experimental | 42 (9 isolates) |
| klebs_clonalgroup_v1.0 | scgMLST629_S | Single-linkage | 43 | experimental | 2399 (1 isolate) |
Schemes and loci
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Tools
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