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Full information on isolate ATCC 43816 KPPR1 (id:1813)

Projects

This isolate is a member of the following projects:

Public isolates
This project contains the isolates that should be publicly available through the public access database.
published_genomes
All isolates with published genome imported in BIGSdb, and validated for scgMLST_S study

Provenance/primary metadata

id
1813
isolate
ATCC 43816 KPPR1
sender
Camille Blin, Institut Pasteur
curator
Audrey Combary, Institut Pasteur, Paris, France (E-mail: audrey.combary@pasteur.fr)
update history
29 updates show details
date entered
2014-08-28
datestamp
2026-02-12
taxonomic designation
K. pneumoniae
phylogroup from ST
Kp1 (7 loci)
QC status
0000
isolation year
2010
country
USA
continent
North America
source type
Unknown
host
Unknown
source details
Spontaneous rifampin Res isolate from ATCC43816
virulence info
laboratory strain. rifampin-resistant mutant commonly used in animal, genetic, and molecular biology studies
accession number
CP009208.1

Publication (1)

  • Broberg CA, Wu W, Cavalcoli JD, Miller VL, Bachman MA (2014). Complete Genome Sequence of Klebsiella pneumoniae Strain ATCC 43816 KPPR1, a Rifampin-Resistant Mutant Commonly Used in Animal, Genetic, and Molecular Biology Studies. Genome Announc 2:

Sequence bin

method
PacBio
contigs
1
length
5,374,834 bp
%GC
57.37
Ns
0
gaps
0
loci tagged
6,718

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962599
Kpn_cgMLST2752273399

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Klebsiella pneumoniae Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella > Klebsiella pneumoniae 100%

Analysis performed: 2025-02-17

Kleborate

species
Klebsiella pneumoniae
species_match
strong
YbST
321
Yersiniabactin
ybt 2; ICEKp1
ybtS
8
ybtX
55
ybtQ
50
ybtP
6
ybtA
5
irp2
117
irp1
125
ybtU
6
ybtT
7
ybtE
7
fyuA
6
CbST
0
AbST
0
SmST
21
Salmochelin
iro 3 (truncated)
iroB
6
iroC
38-4%
iroD
10
iroN
5
RmST
145
RmpADC
rmp 3; ICEKp1
rmpA
20
rmpD
1
rmpC
1
virulence_score
1
Bla_chr
SHV-1*
spurious_resistance_hits
fosA7*?-0%
resistance_score
0
num_resistance_classes
0
num_resistance_genes
0
Ciprofloxacin_prediction
wildtype S
Ciprofloxacin_profile_support
90.99% S (N=5168/5680)
Ciprofloxacin_profile
0^ QRDR, 0 PMQR, 0 aac(6`)-Ib-cr
Ciprofloxacin_MIC_prediction
0.25 mg/L [0.25-0.25]
wzi
wzi2
K_locus
KL2
K_type
K2
K_locus_confidence
Typeable
K_locus_identity
99.73%
O_locus
OL2α.1
O_type
O1αβ,2α
O_locus_confidence
Typeable
O_locus_identity
99.77%

Analysis performed: 2026-02-20; Kleborate v3.2.4

Similar isolates (determined by LIN codes)

Scheme
scgMLST629_S
LIN code
0_0_209_1_0_0_0_0_0_0
Phylogroup
Kp1
Sublineage
SL493
Clonal group
CG493

Show all thresholds

PrefixThresholdMatching isolates
0_0_209_1_0_073
0_0_209_1_0_0_043
0_0_209_1_0_0_0_022
0_0_209_1_0_0_0_0_012
0_0_209_1_0_0_0_0_0_002
061041312
0_058541312
0_0_2091906
0_0_209_1434
0_0_209_1_0104
0_0_209_1_0_073
0_0_209_1_0_0_043
0_0_209_1_0_0_0_022
0_0_209_1_0_0_0_0_012
0_0_209_1_0_0_0_0_0_002

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
klebs_species_v1.0scgMLST629_SSingle-linkage610experimental1 (16003 isolates)
klebs_subspecies_v1.0scgMLST629_SSingle-linkage585experimental1 (15951 isolates)
klebs_sublineage_v1.0scgMLST629_SSingle-linkage190experimental206 (6 isolates)
klebs_clonalgroup_v1.0scgMLST629_SSingle-linkage43experimental303 (4 isolates)
klebs_threshold10_v1.0scgMLST629_SSingle-linkage10experimental480 (4 isolates)
klebs_threshold7_v1.0scgMLST629_SSingle-linkage7experimental1507 (3 isolates)
klebs_threshold4_v1.0scgMLST629_SSingle-linkage4experimental1852 (3 isolates)
klebs_threshold2_v1.0scgMLST629_SSingle-linkage2experimental2311 (3 isolates)
klebs_threshold1_v1.0scgMLST629_SSingle-linkage1experimental3140 (2 isolates)
klebs_threshold0_v1.0scgMLST629_SSingle-linkage0experimental3851 (2 isolates)
klebs_species_v1.0scgMLST629_SSingle-linkage610experimental1 (16003 isolates)
klebs_subspecies_v1.0scgMLST629_SSingle-linkage585experimental1 (15951 isolates)
klebs_sublineage_v1.0scgMLST629_SSingle-linkage190experimental206 (6 isolates)
klebs_clonalgroup_v1.0scgMLST629_SSingle-linkage43experimental303 (4 isolates)
klebs_threshold10_v1.0scgMLST629_SSingle-linkage10experimental480 (4 isolates)
klebs_threshold7_v1.0scgMLST629_SSingle-linkage7experimental1507 (3 isolates)
klebs_threshold4_v1.0scgMLST629_SSingle-linkage4experimental1852 (3 isolates)
klebs_threshold2_v1.0scgMLST629_SSingle-linkage2experimental2311 (3 isolates)
klebs_threshold1_v1.0scgMLST629_SSingle-linkage1experimental3140 (2 isolates)
klebs_threshold0_v1.0scgMLST629_SSingle-linkage0experimental3851 (2 isolates)

Schemes and loci

Tools

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