Full information on isolate NK_H19_005 (id:17860)
Provenance/primary metadata
- id
- 17860
- isolate
- NK_H19_005
- sender
- Marit Andrea Klokkhammer Hetland, Stavanger University Hospital, Department of Medical Microbiology, Norway
- curator
- Auto Tagger
- update history
- 12 updates show details
- embargo history
- show details
- date entered
- 2021-10-20
- datestamp
- 2025-05-29
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2018
- city
- -
- country
- Norway
- continent
- Europe
- source type
- Human
- host
- human
- source details
- blood
- infection
- bacteraemia
Sequence bin
- method
- Unknown
- contigs
- 89
- total length
- 5,333,373 bp
- max length
- 435,426 bp
- mean length
- 59,926 bp
- N50
- 231,209
- L50
- 8
- N90
- 51,526
- L90
- 27
- N95
- 34,155
- L95
- 33
- %GC
- 57.48
- Ns
- 0
- gaps
- 0
- loci tagged
- 3,454
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 628 | 99 | |
| Kpn_cgMLST | 2752 | 2733 | 99 | |
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 0_0_89_0_0_0_9_0_0_0
- Phylogroup
- Kp1
- Sublineage
- SL870
- Clonal group
- CG870
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| klebs_species_v1.0 | scgMLST629_S | Single-linkage | 610 | experimental | 1 (16003 isolates) |
| klebs_subspecies_v1.0 | scgMLST629_S | Single-linkage | 585 | experimental | 1 (15951 isolates) |
| klebs_sublineage_v1.0 | scgMLST629_S | Single-linkage | 190 | experimental | 244 (22 isolates) |
| klebs_clonalgroup_v1.0 | scgMLST629_S | Single-linkage | 43 | experimental | 367 (22 isolates) |
| klebs_species_v1.0 | scgMLST629_S | Single-linkage | 610 | experimental | 1 (16003 isolates) |
| klebs_subspecies_v1.0 | scgMLST629_S | Single-linkage | 585 | experimental | 1 (15951 isolates) |
| klebs_sublineage_v1.0 | scgMLST629_S | Single-linkage | 190 | experimental | 244 (22 isolates) |
| klebs_clonalgroup_v1.0 | scgMLST629_S | Single-linkage | 43 | experimental | 367 (22 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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