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Full information on isolate NK_H17_005 (id:17769)

Provenance/primary metadata

id
17769
isolate
NK_H17_005
sender
Marit Andrea Klokkhammer Hetland, Stavanger University Hospital, Department of Medical Microbiology, Norway
curator
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update history
11 updates show details
embargo history
show details
date entered
2021-10-20
datestamp
2025-05-29
taxonomic designation
K. pneumoniae
QC status
0000
isolation year
2018
city
-
country
Norway
continent
Europe
source type
Human
host
human
source details
blood
infection
bacteraemia

Sequence bin

method
Unknown
contigs
37
total length
5,031,936 bp
max length
569,832 bp
mean length
135,999 bp
N50
362,832
L50
6
N90
92,884
L90
17
N95
53,254
L95
20
%GC
57.85
Ns
0
gaps
0
loci tagged
3,436

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Annotation quality metrics

Scheme completion

SchemeScheme lociDesignated lociAnnotation
ScoreStatus
MLST77100
Ribosomal MLST5353100
scgMLST629_S62962499
Kpn_cgMLST2752274199

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Klebsiella pneumoniae Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella > Klebsiella pneumoniae 100%

Analysis performed: 2022-11-02

Similar isolates (determined by LIN codes)

Scheme
scgMLST629_S
LIN code
0_0_22_32_0_0_1_0_0_0
Phylogroup
Kp1
Sublineage
SL17
Clonal group
CG636

Show all thresholds

PrefixThresholdMatching isolates
0_0_22_32_0_073
0_0_22_32_0_0_142
0_0_22_32_0_0_1_022
0_0_22_32_0_0_1_0_012
0_0_22_32_0_0_1_0_0_002
061041312
0_058541312
0_0_221902257
0_0_22_324311
0_0_22_32_0103
0_0_22_32_0_073
0_0_22_32_0_0_142
0_0_22_32_0_0_1_022
0_0_22_32_0_0_1_0_012
0_0_22_32_0_0_1_0_0_002

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroup
klebs_species_v1.0scgMLST629_SSingle-linkage610experimental1 (16003 isolates)
klebs_subspecies_v1.0scgMLST629_SSingle-linkage585experimental1 (15951 isolates)
klebs_sublineage_v1.0scgMLST629_SSingle-linkage190experimental4 (706 isolates)
klebs_clonalgroup_v1.0scgMLST629_SSingle-linkage43experimental552 (22 isolates)
klebs_threshold10_v1.0scgMLST629_SSingle-linkage10experimental991 (3 isolates)
klebs_threshold7_v1.0scgMLST629_SSingle-linkage7experimental1119 (3 isolates)
klebs_threshold4_v1.0scgMLST629_SSingle-linkage4experimental2968 (2 isolates)
klebs_threshold2_v1.0scgMLST629_SSingle-linkage2experimental3579 (2 isolates)
klebs_threshold1_v1.0scgMLST629_SSingle-linkage1experimental4096 (2 isolates)
klebs_threshold0_v1.0scgMLST629_SSingle-linkage0experimental5016 (2 isolates)
klebs_species_v1.0scgMLST629_SSingle-linkage610experimental1 (16003 isolates)
klebs_subspecies_v1.0scgMLST629_SSingle-linkage585experimental1 (15951 isolates)
klebs_sublineage_v1.0scgMLST629_SSingle-linkage190experimental4 (706 isolates)
klebs_clonalgroup_v1.0scgMLST629_SSingle-linkage43experimental552 (22 isolates)
klebs_threshold10_v1.0scgMLST629_SSingle-linkage10experimental991 (3 isolates)
klebs_threshold7_v1.0scgMLST629_SSingle-linkage7experimental1119 (3 isolates)
klebs_threshold4_v1.0scgMLST629_SSingle-linkage4experimental2968 (2 isolates)
klebs_threshold2_v1.0scgMLST629_SSingle-linkage2experimental3579 (2 isolates)
klebs_threshold1_v1.0scgMLST629_SSingle-linkage1experimental4096 (2 isolates)
klebs_threshold0_v1.0scgMLST629_SSingle-linkage0experimental5016 (2 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

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