Full information on isolate pNDM-OM (id:1623)
Projects
This isolate is a member of the following project:
- Public isolates
- This project contains the isolates that should be publicly available through the public access database.
Provenance/primary metadata
- id
- 1623
- isolate
- pNDM-OM
- sender
- Suzanne Bialek, AP-HP
- curator
- Audrey Combary, Institut Pasteur, Paris, France (E-mail: audrey.combary@pasteur.fr)
- update history
- 7 updates show details
- date entered
- 2013-05-22
- datestamp
- 2025-07-18
- taxonomic designation
- K. pneumoniae
- QC status
- plasmid
- country
- Oman
- continent
- Asia
- source type
- Human
- host
- Human
- source details
- Urinary catheter
- resistance info
- NDM-1
- comments
- Plasmid
- accession number
- JX988621
Publication (1)
- Bonnin RA, Nordmann P, Carattoli A, Poirel L (2013). Comparative genomics of IncL/M-type plasmids: evolution by acquisition of resistance genes and insertion sequences. Antimicrob Agents Chemother 57:674-6
Analysis
Kleborate
- species
- unknown
- virulence_score
- 0
- resistance_score
- 2
- num_resistance_classes
- 5
- num_resistance_genes
- 7
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- K_locus
- unknown (KL186)
- K_type
- unknown (KL186)
- K_locus_confidence
- None
- K_locus_identity
- 0.00%
- K_locus_missing_genes
- KL186_01_galF,KL186_02_cpsACP,KL186_03_wzi,KL186_04_wza,KL186_05_wzb,KL186_06_wzc,KL186_07_wbaP,KL186_08_wctK,KL186_09_wcuP,KL186_10_wclJ,KL186_11,KL186_12,KL186_13_gnd,KL186_14_wzx,KL186_15_wcuL,KL186_16_wcoW,KL186_17_rmlB,KL186_18_rmlA,KL186_19_rmlD,KL186_20_rmlC,KL186_21_ugd
- O_locus
- unknown (OL102)
- O_type
- unknown (OL102)
- O_locus_confidence
- None
- O_locus_identity
- 0.00%
- O_locus_missing_genes
- OL102_01_rfbB,OL102_02_rfbA,OL102_03_rfbD,OL102_04_rfbC,OL102_05_wbbL,OL102_06_rhamnan,OL102_07_wzm,OL102_08_wzt
- AGly_acquired
- aac(3)-IId^;armA
- MLS_acquired
- mphE.v2;msrE
- Sul_acquired
- sul1
- Bla_acquired
- TEM-1D.v1^
- Bla_Carb_acquired
- NDM-1
- spurious_resistance_hits
- DHA-1?-70%
Analysis performed: 2025-03-14; Kleborate v2.3.2
Tools
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