Full information on isolate K7119 (id:15039)
Provenance/primary metadata
- id
- 15039
- isolate
- K7119
- sender
- Mattia Palmieri, Data Analytics Unit, bioMérieux, La Balme Les Grottes, France,
- curator
- Auto Tagger
- update history
- 13 updates show details
- date entered
- 2020-10-09
- datestamp
- 2023-01-22
- taxonomic designation
- K. quasipneumoniae subsp. similipneumoniae
- QC status
- 0000
- isolation year
- 2011
- city
- Beijing
- country
- China
- continent
- Asia
- source type
- Human
- host
- Human
- source details
- Unknown
Sequence bin
- contigs
- 34
- total length
- 5,295,842 bp
- max length
- 2,493,065 bp
- mean length
- 155,761 bp
- N50
- 775,050
- L50
- 2
- N90
- 322,991
- L90
- 6
- N95
- 83,508
- L95
- 9
- %GC
- 57.93
- Ns
- 0
- gaps
- 0
- loci tagged
- 702
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 53 | 100 | |
| scgMLST629_S | 629 | 611 | 97 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Klebsiella quasipneumoniae | Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella > Klebsiella quasipneumoniae | 100% |
Analysis performed: 2022-11-02
Kleborate
- species
- Klebsiella quasipneumoniae subsp. similipneumoniae
- species_match
- strong
- virulence_score
- 1
- resistance_score
- 1
- num_resistance_classes
- 6
- num_resistance_genes
- 10
- Yersiniabactin
- ybt 2; ICEKp1
- YbST
- 323
- CbST
- 0
- AbST
- 0
- Salmochelin
- iro 3 (truncated)
- SmST
- 7
- RmpADC
- rmp 3; ICEKp1
- RmST
- 47
- wzi
- wzi233
- K_locus
- KL1
- K_type
- K1
- K_locus_problems
- ?-*
- K_locus_confidence
- Good
- K_locus_identity
- 94.30%
- K_locus_missing_genes
- KL1_18_manC,KL1_19_manB
- O_locus
- O3/O3a
- O_type
- O3/O3a
- O_locus_problems
- ?-
- O_locus_confidence
- Good
- O_locus_identity
- 96.06%
- O_locus_missing_genes
- O3/O3a_01_manC,O3/O3a_02_manB
- AGly_acquired
- aac(6')-Ib-cr.v2;armA
- MLS_acquired
- mphE.v2;msrE
- Phe_acquired
- catB3.v2
- Tmt_acquired
- dfrA1.v2
- Bla_acquired
- FONA-5*;OXA-1;TEM-1D.v1^
- Bla_ESBL_acquired
- SFO-1.v1
- Bla_chr
- OKP-B-9*
- spurious_resistance_hits
- aadA5?-55%;arr-2?-55%
- ybtS
- 8
- ybtX
- 7
- ybtQ
- 9
- ybtP
- 6
- ybtA
- 5
- irp2
- 13
- irp1
- 1
- ybtU
- 6
- ybtT
- 7
- ybtE
- 7
- fyuA
- 6
- iroB
- 6
- iroC
- 19-4%
- iroD
- 10
- iroN
- 5
- rmpA
- 11
- rmpD
- 10
- rmpC
- 6
Analysis performed: 2024-03-22; Kleborate v2.3.2
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| klebs_species_v1.0 | scgMLST629_S | Single-linkage | 610 | experimental | 1 (13437 isolates) |
| klebs_subspecies_v1.0 | scgMLST629_S | Single-linkage | 585 | experimental | 1 (13416 isolates) |
| klebs_sublineage_v1.0 | scgMLST629_S | Single-linkage | 190 | experimental | 42 (9 isolates) |
| klebs_clonalgroup_v1.0 | scgMLST629_S | Single-linkage | 43 | experimental | 42 (5 isolates) |
| klebs_species_v1.0 | scgMLST629_S | Single-linkage | 610 | experimental | 1 (13437 isolates) |
| klebs_subspecies_v1.0 | scgMLST629_S | Single-linkage | 585 | experimental | 1 (13416 isolates) |
| klebs_sublineage_v1.0 | scgMLST629_S | Single-linkage | 190 | experimental | 42 (9 isolates) |
| klebs_clonalgroup_v1.0 | scgMLST629_S | Single-linkage | 43 | experimental | 42 (5 isolates) |
Schemes and loci
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