Full information on isolate KP_NORM_BLD_61044 (id:10209)
Provenance/primary metadata
- id
- 10209
- isolate
- KP_NORM_BLD_61044
- sender
- Marit Andrea Klokkhammer Hetland, Stavanger University Hospital, Department of Medical Microbiology, Norway
- curator
- Auto Tagger
- update history
- 13 updates show details
- embargo history
- show details
- date entered
- 2019-10-16
- datestamp
- 2026-03-13
- taxonomic designation
- K. pneumoniae
- QC status
- 0000
- isolation year
- 2009
- country
- Norway
- continent
- Europe
- host
- Homo sapiens
- source details
- Blood
Sequence bin
- method
- Illumina
- contigs
- 76
- total length
- 5,103,602 bp
- max length
- 530,647 bp
- mean length
- 67,153 bp
- N50
- 204,716
- L50
- 8
- N90
- 45,306
- L90
- 30
- N95
- 25,994
- L95
- 38
- %GC
- 57.53
- Ns
- 0
- gaps
- 0
- loci tagged
- 3,332
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Annotation quality metrics
Scheme completion
| Scheme | Scheme loci | Designated loci | Annotation | |
|---|---|---|---|---|
| Score | Status | |||
| MLST | 7 | 7 | 100 | |
| Ribosomal MLST | 53 | 50 | 94 | |
| scgMLST629_S | 629 | 608 | 96 | |
| Kpn_cgMLST | 2752 | 2647 | 96 | |
Analysis
rMLST species identification
| Rank | Taxon | Taxonomy | Support | Matches |
|---|---|---|---|---|
| SPECIES | Klebsiella pneumoniae | Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella > Klebsiella pneumoniae | 100% |
Analysis performed: 2022-11-02
Kaptive
| Database | Best match locus | Best match type | Match confidence | Problems | Identity | Coverage | Length discrepancy | Expected genes in locus | Missing expected genes | Other genes in locus | Other genes in locus, details | Expected genes outside locus | Expected genes outside locus, details | Other genes outside locus | Other genes outside locus, details | Truncated genes, details | Extra genes, details |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Klebsiella K locus | KL114 | unknown (KL114) | Typeable | ?4- | 99.50% | 59.56% | n/a | 12 / 19 (63.16%) | KL114_09_wciP;KL114_11_wcqZ;KL114_08_wzy;KL114_10_wzx;KL114_14_wbaZ;KL114_13;KL114_12_wcuQ | 0 | 0 / 19 (0.00%) | 2 | KL40_05_rfaG,98.67%,99.21%;KL150_19_gmd,99.10%,100.00% | ||||
| Klebsiella O locus | OL2α.1 | O1αβ,2α | Typeable | 99.03% | 100.00% | -2 bp | 7 / 7 (100.00%) | 0 | 0 / 7 (0.00%) | 2 | OL3γ_01_manC,99.58%,100.00%;OL3α/β_02_manB,99.55%,97.39% | Extra_genes_wbbYZ_02_wbbY,99.86%,100.00%;Extra_genes_wbbYZ_01_wbbZ,99.26%,100.00% |
Klebsiella K locus
Klebsiella O locus
Analysis performed: 2026-03-14; Kaptive Version 3.1.0. Citation: Stanton et al. (2025) bioRxiv 2025.02.05.636613.
Kleborate
- species
- Klebsiella pneumoniae
- species_match
- strong
- YbST
- 0
- CbST
- 0
- AbST
- 0
- SmST
- 0
- RmST
- 0
- virulence_score
- 0
- Bla_chr
- SHV-1^
- resistance_score
- 0
- num_resistance_classes
- 0
- num_resistance_genes
- 0
- Ciprofloxacin_prediction
- wildtype S
- Ciprofloxacin_profile_support
- 90.99% S (N=5168/5680)
- Ciprofloxacin_profile
- 0^ QRDR, 0 PMQR, 0 aac(6`)-Ib-cr
- Ciprofloxacin_MIC_prediction
- 0.25 mg/L [0.25-0.25]
- wzi
- wzi325
- K_locus
- KL114
- K_type
- unknown (KL114)
- K_locus_confidence
- Typeable
- K_locus_problems
- ?4-
- K_locus_identity
- 99.50%
- K_Missing_expected_genes
- KL114_10_wzx;KL114_11_wcqZ;KL114_09_wciP;KL114_08_wzy;KL114_12_wcuQ;KL114_14_wbaZ;KL114_13
- O_locus
- OL2α.1
- O_type
- O1αβ,2α
- O_locus_confidence
- Typeable
- O_locus_identity
- 99.03%
Analysis performed: 2026-03-14; Kleborate v3.2.4
Similar isolates (determined by LIN codes)
- Scheme
- scgMLST629_S
- LIN code
- 0_0_88_2_0_0_0_0_0_0
- Phylogroup
- Kp1
- Sublineage
- SL231
- Clonal group
- CG14380
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group |
|---|---|---|---|---|---|
| klebs_species_v1.0 | scgMLST629_S | Single-linkage | 610 | experimental | 1 (16003 isolates) |
| klebs_subspecies_v1.0 | scgMLST629_S | Single-linkage | 585 | experimental | 1 (15951 isolates) |
| klebs_sublineage_v1.0 | scgMLST629_S | Single-linkage | 190 | experimental | 48 (97 isolates) |
| klebs_clonalgroup_v1.0 | scgMLST629_S | Single-linkage | 43 | experimental | 2724 (2 isolates) |
| klebs_species_v1.0 | scgMLST629_S | Single-linkage | 610 | experimental | 1 (16003 isolates) |
| klebs_subspecies_v1.0 | scgMLST629_S | Single-linkage | 585 | experimental | 1 (15951 isolates) |
| klebs_sublineage_v1.0 | scgMLST629_S | Single-linkage | 190 | experimental | 48 (97 isolates) |
| klebs_clonalgroup_v1.0 | scgMLST629_S | Single-linkage | 43 | experimental | 2724 (2 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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