Full information on isolate KP_NORM_BLD_53804 (id:10164)

Provenance/primary metadata

id: 10164
isolate: KP_NORM_BLD_53804
alias: KP_NORM_BLD_2008_53804
sender: Marit Andrea Klokkhammer Hetland, Stavanger University Hospital, Department of Medical Microbiology, Norway
curator: Auto Tagger
update history: 11 updates show details
embargo history: show details
date entered: 2019-10-16
datestamp: 2025-05-29
taxonomic designation: K. pneumoniae
QC status: 0000
isolation year: 2008
country: Norway
continent: Europe
host: Homo sapiens
source details: Blood
resistance info: ESBL

Scheme	Scheme loci	Designated loci	Annotation
Scheme	Scheme loci	Designated loci	Score	Status
MLST	7	7	100
Ribosomal MLST	53	53	100
scgMLST629_S	629	626	99
Kpn_cgMLST	2752	2720	98

Rank	Taxon	Taxonomy	Support	Matches
SPECIES	Klebsiella pneumoniae	Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Klebsiella > Klebsiella pneumoniae	100%

Analysis performed: 2022-11-02

Database	Best match locus	Best match type	Match confidence	Problems	Identity	Coverage	Length discrepancy	Expected genes in locus	Missing expected genes	Other genes in locus	Other genes in locus, details	Expected genes outside locus	Expected genes outside locus, details	Other genes outside locus	Other genes outside locus, details	Truncated genes, details	Extra genes, details
Klebsiella K locus	KL51	K51	Typeable	?2-!	99.74%	67.29%	n/a	11 / 16 (68.75%)	KL51_08_wcpB;KL51_09_wzy;KL51_10_wcuF;KL51_11_wcpA;KL51_12_wzx	0		0 / 16 (0.00%)		4	KL40_03_wcpO,98.99%,100.00%;KL40_04,99.75%,100.00%;KL40_05_rfaG,99.47%,100.00%;KL150_19_gmd,98.80%,100.00%	KL51_14_wcoZ,100.00%,24.15%,truncated
Klebsiella O locus	OL2α.2	O1αβ,2β	Typeable		99.17%	100.00%	0 bp	7 / 7 (100.00%)		0		0 / 7 (0.00%)		0			Extra_genes_wbbYZ_02_wbbY,99.86%,100.00%;Extra_genes_gml2β_03_gmlC,97.12%,100.00%;Extra_genes_gml2β_02_gmlB,99.39%,100.00%;Extra_genes_wbbYZ_01_wbbZ,99.26%,100.00%;Extra_genes_gml2β_01_gmlA,99.20%,100.00%

Analysis performed: 2026-03-14; Kaptive Version 3.1.0. Citation: Stanton et al. (2025) bioRxiv 2025.02.05.636613.

species: Klebsiella pneumoniae
species_match: strong
YbST: 183
Yersiniabactin: ybt 9; ICEKp3
ybtS: 5
ybtX: 11
ybtQ: 6
ybtP: 5
ybtA: 1
irp2: 25
irp1: 37
ybtU: 9
ybtT: 5
ybtE: 5
fyuA: 11
CbST: 0
AbST: 0
SmST: 0
RmST: 0
virulence_score: 1
AGly_acquired: aac(3)-IId^
Flq_acquired: qnrA1
Sul_acquired: sul1
Tet_acquired: tet(D)
Tmt_acquired: dfrA14.v2*
Flq_mutations: GyrA:p.Ser83Ile;ParC:p.Ser80Ile
spurious_resistance_hits: SHV-106?-0%
resistance_score: 0
num_resistance_classes: 6
num_resistance_genes: 6
Ciprofloxacin_prediction: nonwildtype R
Ciprofloxacin_profile_support: 99.22% R (N=2424/2443)
Ciprofloxacin_profile: >0 QRDR, >0 PMQR, * aac(6`)-Ib-cr
Ciprofloxacin_MIC_prediction: 4 mg/L [4-4]
wzi: wzi104
K_locus: KL51
K_type: K51
K_locus_confidence: Typeable
K_locus_problems: ?2-!
K_locus_identity: 99.74%
K_Missing_expected_genes: KL51_11_wcpA;KL51_10_wcuF;KL51_12_wzx;KL51_09_wzy;KL51_08_wcpB
O_locus: OL2Î±.2
O_type: O1Î±Î²,2Î²
O_locus_confidence: Typeable
O_locus_identity: 99.17%

Analysis performed: 2026-03-14; Kleborate v3.2.4

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification scheme	Underlying scheme	Clustering method	Mismatch threshold	Status	Group
klebs_species_v1.0	scgMLST629_S	Single-linkage	610	experimental	1 (16003 isolates)
klebs_subspecies_v1.0	scgMLST629_S	Single-linkage	585	experimental	1 (15951 isolates)
klebs_sublineage_v1.0	scgMLST629_S	Single-linkage	190	experimental	48 (97 isolates)
klebs_clonalgroup_v1.0	scgMLST629_S	Single-linkage	43	experimental	49 (90 isolates)
klebs_species_v1.0	scgMLST629_S	Single-linkage	610	experimental	1 (16003 isolates)
klebs_subspecies_v1.0	scgMLST629_S	Single-linkage	585	experimental	1 (15951 isolates)
klebs_sublineage_v1.0	scgMLST629_S	Single-linkage	190	experimental	48 (97 isolates)
klebs_clonalgroup_v1.0	scgMLST629_S	Single-linkage	43	experimental	49 (90 isolates)

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