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Isolate count

319

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Genome count

319

0 [month]

319 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
8693	M2		K. pneumoniae		0000	Human	Human	Urine	UTI		2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	9986	0_0_88_0_0_0_0_13_0_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
8694	M6		K. pneumoniae		0000	Human	Human	Urine	UTI		2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	204,11933	0_0_88_0_0_0_0_11_0_0	Kp1	SL231	CG231
10973	OM715		K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	139191	Klebsiella pneumoniae	14144,14527,14544,14569	0_0_88_0_0_0_0_16_0_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
16056	G18253166		K. pneumoniae			Human	Human	Blood	colonization	Other	2	6	1	3	26	1	758	5602	18944	Klebsiella pneumoniae	11190,11669	0_0_88_0_0_0_0_0_2_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23359	DRR122250	SAMD00111784	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	16901	0_0_88_0_0_0_0_59_4_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23371	DRR122270	SAMD00111804	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	16911	0_0_88_0_0_0_0_59_1_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23409	DRR122482	SAMD00108799	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	16931	0_0_88_0_0_0_0_59_0_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23410	DRR122484	SAMD00108801	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	16931,16932,18069	0_0_88_0_0_0_0_59_0_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23420	DRR122511	SAMD00108828	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	16938	0_0_88_0_0_0_0_61_0_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23515	DRR150396	SAMD00137851	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	16972	0_0_88_0_0_0_0_59_2_0	Kp1	SL231	CG231
23691	DRR150686	SAMD00138141	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	210036	Klebsiella pneumoniae	17026	0_0_88_0_0_0_0_76_0_0	Kp1	SL231	CG231
23716	DRR150732	SAMD00138187	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	17026	0_0_88_0_0_0_0_76_0_0	Kp1	SL231	CG231
23740	DRR150980	SAMD00138541	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	17046	0_0_88_0_0_0_0_0_21_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23741	DRR150981	SAMD00138542	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	17047,17052,17056,19816	0_0_88_0_0_0_0_0_12_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23746	DRR150988	SAMD00138549	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	17052	0_0_88_0_0_0_0_0_12_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23747	DRR150989	SAMD00138550	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	17047,17052,17056,19816	0_0_88_0_0_0_0_0_12_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23749	DRR150991	SAMD00138552	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	17047,17052,17056,19816	0_0_88_0_0_0_0_0_12_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23751	DRR150993	SAMD00138554	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	17052	0_0_88_0_0_0_0_0_12_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23754	DRR150996	SAMD00138557	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	17056	0_0_88_0_0_0_0_0_12_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23756	DRR150998	SAMD00138559	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	17056	0_0_88_0_0_0_0_0_12_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23758	DRR151000	SAMD00138561	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	17047,17052,17056,19816	0_0_88_0_0_0_0_0_12_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23760	DRR151002	SAMD00138563	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	17047,17052,17056,19816	0_0_88_0_0_0_0_0_12_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23761	DRR151003	SAMD00138564	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	17047,17052,17056,19816	0_0_88_0_0_0_0_0_12_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23765	DRR151008	SAMD00138569	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	17047,17052,17056,19816	0_0_88_0_0_0_0_0_12_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23767	DRR151010	SAMD00138571	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	17047,17052,17056,19816	0_0_88_0_0_0_0_0_12_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5

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belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
GenEpi-Bio_DS_1
GenEpi-Bio_DS_2
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature