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Allele designations/scheme field values
Allele designation counts
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Isolate count

517

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Genome count

517

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517 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
2894	08-058D		K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Sputum	Human_infection		2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	12965	0_0_88_0_0_3_0_0_1_0	Kp1	SL231	CG231	23	iuc 3
2896	08-1177m		K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood	Human_invasive		2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	9727	0_0_88_0_0_3_0_0_1_0	Kp1	SL231	CG231									230	ybt 15; ICEKp11
2898	09-0079m		K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood	Human_invasive		2	6	1	3	26	1	77	231			9729	0_0_88_0_0_3_2_0_0_0	Kp1	SL231	CG231									230	ybt 15; ICEKp11
3150	UI_3324		K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood	Human_invasive		2	6	1	3	26	1	56	1190	19179	Klebsiella pneumoniae	13021	0_0_88_2_0_1_0_0_0_0	Kp1	SL231	CG231
8693	M2		K. pneumoniae		0000	Human	Human	Urine	UTI		2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	9986	0_0_88_0_0_0_0_13_0_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
8694	M6		K. pneumoniae		0000	Human	Human	Urine	UTI		2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	204,11933	0_0_88_0_0_0_0_11_0_0	Kp1	SL231	CG231
10973	OM715		K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	139191	Klebsiella pneumoniae	14144,14527,14544,14569	0_0_88_0_0_0_0_16_0_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
13440	SPARK_1881_C1		K. pneumoniae		0000	Human	Human	Urine			2	6	1	3	26	1	56	1190	139449	Klebsiella pneumoniae	10506	0_0_88_1_1_0_0_0_0_0	Kp1	SL231	CG231
14259	SPARK_683_C1		K. pneumoniae		0000	Human	Human	Blood			2	6	1	3	26	1	56	1190	139449	Klebsiella pneumoniae	10506	0_0_88_1_1_0_0_0_0_0	Kp1	SL231	CG231
14270	SPARK_696_C1		K. pneumoniae		0000	Human	Human	Urine			2	6	1	3	26	1	56	1190	139449	Klebsiella pneumoniae	10506	0_0_88_1_1_0_0_0_0_0	Kp1	SL231	CG231
14280	SPARK_705_C1		K. pneumoniae		0000	Human	Human	Blood			2	6	1	3	26	1	56	1190	139449	Klebsiella pneumoniae	10506	0_0_88_1_1_0_0_0_0_0	Kp1	SL231	CG231
16056	G18253166		K. pneumoniae			Human	Human	Blood	colonization	Other	2	6	1	3	26	1	758	5602	18944	Klebsiella pneumoniae	11190,11669	0_0_88_0_0_0_0_0_2_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
21764	KH-03150		K. pneumoniae		0000	Human	Human	Anus			2	6	1	392	26	1	77	5970	18944	Klebsiella pneumoniae	11758	0_0_88_0_2_0_0_0_0_0	Kp1	SL231	CG231
21938	FMUL5		K. pneumoniae		0000	Human	Human	Biopsy			2	6	1	3	26	1	77	231	44154	Klebsiella pneumoniae	11817	0_0_88_0_0_0_15_1_1_0	Kp1	SL231	CG231									584	ybt 9; ICEKp?
22011	FMUL680		K. pneumoniae		0000	Human	Human	Purulent exudate			2	6	1	3	26	1	77	231	44154	Klebsiella pneumoniae	11823	0_0_88_0_0_0_15_2_0_0	Kp1	SL231	CG231									584	ybt 9; ICEKp?
22404	G20252107	P-1721	K. pneumoniae		0000	Human	Human	Pus swab		Full sequencing of CPS cluster	2	6	462	3	26	1	77	6259	18944	Klebsiella pneumoniae	16482	0_0_88_0_0_0_18_0_0_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
22406	G20252163	P-2774	K. pneumoniae		0000	Human	Human	Pus swab		Full sequencing of CPS cluster	2	6	462	3	26	1	869	6261	18944	Klebsiella pneumoniae	16484	0_0_88_0_0_0_19_0_0_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23342	DRR122210	SAMD00111748	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	16891	0_0_88_0_0_5_0_0_1_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23359	DRR122250	SAMD00111784	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	16901	0_0_88_0_0_0_0_59_4_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23371	DRR122270	SAMD00111804	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	16911	0_0_88_0_0_0_0_59_1_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23375	DRR122274	SAMD00111808	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	209833	Klebsiella pneumoniae	16914,17012,17044	0_0_88_0_0_0_26_0_0_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23386	DRR122298	SAMD00111832	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	209833	Klebsiella pneumoniae	16914,17012,17044	0_0_88_0_0_0_26_0_0_0	Kp1	SL231	CG231
23409	DRR122482	SAMD00108799	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	16931	0_0_88_0_0_0_0_59_0_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23410	DRR122484	SAMD00108801	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	16931,16932,18069	0_0_88_0_0_0_0_59_0_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5
23420	DRR122511	SAMD00108828	K. pneumoniae		0000	Human	Human	Unknown			2	6	1	3	26	1	77	231	18944	Klebsiella pneumoniae	16938	0_0_88_0_0_0_0_61_0_0	Kp1	SL231	CG231									376	ybt 14; ICEKp5

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belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
GenEpi-Bio_DS_1
GenEpi-Bio_DS_2
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature