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34 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
4603	SB5557	1297	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		4	1	1	1	21	1	35	76	139291	Klebsiella pneumoniae	13239	0_0_46_5_5_0_0_0_0_0	Kp1	SL76	CG10052
9529	SB6474	MVK-03E157	K. pneumoniae		0000	Environment	Environment	soil			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	8453	0_0_46_5_0_1_0_0_1_0	Kp1	SL76	CG10052
13133	SPARK_137_C1		K. pneumoniae		0000	Human	Human	Sputum			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	10338	0_0_46_5_4_0_0_0_0_0	Kp1	SL76	CG10052
13181	SPARK_1431_C1		K. pneumoniae		0000	Human	Human	Intestinal			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	10365	0_0_46_5_4_0_0_0_1_0	Kp1	SL76	CG10052
22995	NMI4379/16		K. pneumoniae			Human	human	rectal swab			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	16632	0_0_46_5_0_1_0_1_0_0	Kp1	SL76	CG10052
24703	ERR4920547	SAMEA7472517	K. pneumoniae		0000	Human	Human	Blood			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	17858	0_0_46_5_20_1_0_0_0_0	Kp1	SL76	CG10052
25106	DRR320065	SAMD00399279	K. pneumoniae		0000	Human	Human	Unknown			4	1	1	1	21	1	35	76			18223	0_0_46_5_13_0_0_0_0_0	Kp1	SL76	CG10052
25491	ERR4795701	G18000809; GMR-RA 888; SAMEA6375533	K. pneumoniae		0000	Human	Human	Blood			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	18574	0_0_46_5_12_0_0_0_0_0	Kp1	SL76	CG10052
25542	ERR4795555	G18000950; GMR-RA 449.16; SAMEA5976628	K. pneumoniae		0000	Human	Human	Blood			4	1	1	1	21	1	35	76	139291	Klebsiella pneumoniae	18620	0_0_46_5_17_0_0_0_0_0	Kp1	SL76	CG10052
26160	ERR4795803	G18000231; RB 718; SAMEA6375364	K. pneumoniae		0000	Human	Human	Urine			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	19043	0_0_46_5_11_0_0_0_0_0	Kp1	SL76	CG10052
26301	ERR4795484	G18001061; GMR-RA 273.17; SAMEA5855695	K. pneumoniae		0000	Human	Human	Tracheal aspirate			4	1	1	1	21	1	35	76	139291	Klebsiella pneumoniae	18620	0_0_46_5_17_0_0_0_0_0	Kp1	SL76	CG10052
27900	ERR2303443	56; SAMEA104590283	K. pneumoniae		0000	Human	Human	Swab			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	20358	0_0_46_5_18_0_0_0_0_0	Kp1	SL76	CG10052
28121	ERR4019904	EbB064; SAMEA6658695	K. pneumoniae		0000	Human	Human	Clinical			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	20529	0_0_46_5_3_0_0_1_0_0	Kp1	SL76	CG10052
30283	SRR10694526	SAMN13523842	K. pneumoniae		0000	Farm Animal	bovine	mastitis milk			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	22347	0_0_46_5_15_0_0_0_0_0	Kp1	SL76	CG10052
30416	SRR11819382	SAMN14967636	K. pneumoniae		0000	Human	Human	clinical			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	22466	0_0_46_5_19_0_0_0_0_0	Kp1	SL76	CG10052
30472	SRR11819317	SAMN14967537	K. pneumoniae		0000	Human	Human	Surveillance			4	1	1	1	21	1	35	76	209270	Klebsiella pneumoniae	22519	0_0_46_5_22_0_0_0_0_0	Kp1	SL76	CG10052
30825	SRR12508700	SAMN15868898	K. pneumoniae		0000	Human	Human	Non-wound abdominal			4	1		1	21	1	35		58534	Klebsiella pneumoniae	22846	0_0_46_5_16_0_0_0_0_0	Kp1	SL76	CG10052
32118	SRR12972224	SAMN16624233	K. pneumoniae		0000	Human	Human	urine			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	23934	0_0_46_5_11_1_0_1_0_0	Kp1	SL76	CG10052
33157	SRR11791361	N19-01454; SAMN12732061	K. pneumoniae		0000	Human	Human	Blood			4	1	1	1		1	35		58534	Klebsiella pneumoniae	24637	0_0_46_5_9_0_0_0_0_0	Kp1	SL76	CG10052
36078	SRR14450285	SAMN19016728	K. pneumoniae		0000	Human	Human	urine			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	22466	0_0_46_5_19_0_0_0_0_0	Kp1	SL76	CG10052
36672	SRR15047161	SAMN20064936	K. pneumoniae		0000	Human	Human	Unknown			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	27099	0_0_46_5_8_0_0_0_0_0	Kp1	SL76	CG10052
38561	SRR16675822	SAMN22818266	K. pneumoniae		0000	Human	Human	urine			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	28515	0_0_46_5_11_1_0_0_0_0	Kp1	SL76	CG10052
41233	SRR18175676	SAMN26101462	K. pneumoniae		0000	Unknown	Unknown	Uterus Swab			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	30272	0_0_46_5_21_0_0_0_0_0	Kp1	SL76	CG10052
42235	SRR7867327	SAMN10080389	K. pneumoniae		0000	Human	Human	Unknown			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	31002	0_0_46_5_20_0_0_0_1_0	Kp1	SL76	CG10052
42499	SRR7867328	CRE24; SAMN10080388	K. pneumoniae		0000	Human	Human	Unknown			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	31240	0_0_46_5_20_0_0_2_0_0	Kp1	SL76	CG10052

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belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
GenEpi-Bio_DS_1
GenEpi-Bio_DS_2
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature