Search or browse database

Enter search criteria or leave blank to browse all records. Modify form parameters to filter or enter a list of values.

Isolate provenance/primary metadata fields

Display/sort options

Order by:
Display: records per page

Action Reset

Modify form parameters

Click to add or remove additional query terms:

Provenance fields
Allele designations/scheme field values
Allele designation counts
Allele designation status
Annotation status
Sequence bin
Assembly checks
Tagged sequence counts
Tagged sequence status
Attribute values list
Filters

Isolate count

0 [month]

Genome count

0 [month]

30 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
12075	MVK-04F020		K. pneumoniae		0000		environment	chicken meat			2	10	1	1	14	3	20	6	43687	Klebsiella pneumoniae	5477	0_0_127_8_8_0_0_0_0_0	Kp1	SL6	CG6
13242	SPARK_1530_C1		K. pneumoniae		0000	Human	Human	Urine			2	10	1	1	14	3	20	6	43687	Klebsiella pneumoniae	10402	0_0_127_8_8_1_0_0_0_0	Kp1	SL6	CG6									376	ybt 14; ICEKp5
13559	SPARK_2063_C1		K. pneumoniae		0000	Human	Human	Faeces			2	10	1	1	14	3	20	6	210298	Klebsiella pneumoniae	10566	0_0_127_8_12_0_1_0_0_0	Kp1	SL6	CG6									376	ybt 14; ICEKp5
14016	SPARK_36_C2		K. pneumoniae		0000	Human	Human	Intestinal			2	10	1	1	14	3	20	6	43687	Klebsiella pneumoniae	10847	0_0_127_8_15_0_0_0_0_1	Kp1	SL6	CG6
14017	SPARK_36_C3		K. pneumoniae		0000	Human	Human	Intestinal			2	10	1	1	14	3	20	6	139374	Klebsiella pneumoniae	10848	0_0_127_8_15_0_0_0_0_0	Kp1	SL6	CG6
22999	NMI4838/16		K. pneumoniae			Human	human	BAL			2	10	1	1	14	3	91	908	44124	Klebsiella pneumoniae	16636	0_0_127_8_14_1_2_0_0_0	Kp1	SL6	CG6
30260	SRR10694558	SAMN13523813	K. pneumoniae		0000	Farm Animal	bovine	mastitis milk			2	10	1	1	14	3	20	6	65815	Klebsiella pneumoniae	22324	0_0_127_8_21_0_0_0_0_0	Kp1	SL6	CG6
34631	SRR10905537	AS012314; SAMN12250633	K. pneumoniae		0000	Human	Human	Lung			91	10	1	1	14	3	20	6559	43687	Klebsiella pneumoniae	25653	0_0_127_8_16_0_0_0_0_0	Kp1	SL6	CG6
36038	SRR14449699	SAMN19016413	K. pneumoniae		0000	Human	Human	urine			2	10	1	1	14	3	20	6	43687	Klebsiella pneumoniae	26666	0_0_127_8_19_0_0_0_0_0	Kp1	SL6	CG6
43560	SRR3051245	C00026621; SAMN04357413	K. pneumoniae		0000	Human	Human	Blood			2	10	1	1	14	3	20	6	43687	Klebsiella pneumoniae	32107	0_0_127_8_17_0_0_0_0_0	Kp1	SL6	CG6
43917	SRR8174898	K053; SAMN10390488	K. pneumoniae		0000	Human	Human	Faeces			2	10	1	1	14	3	20	6	139674	Klebsiella pneumoniae	32396	0_0_127_8_18_0_0_0_0_0	Kp1	SL6	CG6
46430	SRR2098701	Kpn_0006; SAMN03853225	K. pneumoniae		0000	Food	Food	Retail chicken			2	10	1	1	14	3	20	6	43687	Klebsiella pneumoniae	34221	0_0_127_8_20_0_0_0_0_0	Kp1	SL6	CG6
47736	GCA_001404095.1	CH1034	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	14	3	20	6	43687	Klebsiella pneumoniae	1024	0_0_127_8_4_0_0_0_0_0	Kp1	SL6	CG6									152	ybt 14; ICEKp5
48320	GCA_900511215.1	EuSCAPE_AT013	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	14	3	20	6	43964	Klebsiella pneumoniae	1439	0_0_127_8_3_0_0_0_0_0	Kp1	SL6	CG6
48466	GCA_900512325.1	EuSCAPE_DE021	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	14	3	20	6	43687	Klebsiella pneumoniae	1563	0_0_127_8_1_0_0_0_0_0	Kp1	SL6	CG6
48471	GCA_900512425.1	EuSCAPE_DE027	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	14	3	20	6	43687	Klebsiella pneumoniae	1568	0_0_127_8_2_0_0_0_0_0	Kp1	SL6	CG6
48645	GCA_900500825.1	EuSCAPE_ES267	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	14	3	20	6	44123	Klebsiella pneumoniae	1713	0_0_127_8_6_0_0_0_0_0	Kp1	SL6	CG6
48717	GCA_900517865.1	EuSCAPE_GR009	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	14	3	20	6	44124	Klebsiella pneumoniae	1777	0_0_127_8_7_0_0_0_0_0	Kp1	SL6	CG6
51587	GCA_001929345.1	ATCC 9621	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	14	3	20	6	65815	Klebsiella pneumoniae	4131	0_0_127_8_0_0_0_0_0_0	Kp1	SL6	CG6
52458	GCA_900174195.1	VRCO0314	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	14	3	20	6	58595	Klebsiella pneumoniae	4729	0_0_127_8_5_0_0_0_0_0	Kp1	SL6	CG6
52459	GCA_900173975.1	VRCO0315	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	14	3	20	6	58595	Klebsiella pneumoniae	4729,8365	0_0_127_8_5_0_0_0_0_0	Kp1	SL6	CG6
52460	GCA_900173405.1	VRCO0316	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	14	3	20	6	58595	Klebsiella pneumoniae	4729,8365	0_0_127_8_5_0_0_0_0_0	Kp1	SL6	CG6
52461	GCA_900173395.1	VRCO0317	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	14	3	20	6	58595	Klebsiella pneumoniae	4729,8365	0_0_127_8_5_0_0_0_0_0	Kp1	SL6	CG6
52462	GCA_900173425.1	VRCO0318	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	14	3	20	6	58595	Klebsiella pneumoniae	4729,8365	0_0_127_8_5_0_0_0_0_0	Kp1	SL6	CG6
52463	GCA_900173435.1	VRCO0319	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	14	3	20	6	58595	Klebsiella pneumoniae	4729,8365	0_0_127_8_5_0_0_0_0_0	Kp1	SL6	CG6

Analysis tools

Breakdown:

Analysis:

Export:

Third party:

Dashboard settings

Layout

Links

Open links in new tab

Element controls

Enable options
Enable removal

Visual elements

Palette:
Note changing palette will reset user-selected colours.
Field: Add element

Versions

linked to any publication
not linked to any publication
Abdelsalam et al. 2023 Microbiol Spectr 11:e0134423
Abe et al. 2021 J Antimicrob Chemother 76:3314-3317
Avgoulea et al. 2018 Antimicrob Agents Chemother 62:
Bialek-Davenet et al. 2013 Epidemiol Infect 141:188
Bialek-Davenet et al. 2014 Emerg Infect Dis 20:1812-20
Bialek-Davenet et al. 2015 J Antimicrob Chemother 70:81-8
Biedrzycka et al. 2021 J Antimicrob Chemother 76:2538-2545
Biedrzycka et al. 2022 J Antimicrob Chemother 77:3367-3375
Blin et al. 2017 Environ Microbiol 19:1881-1898
Bonnin et al. 2013 Antimicrob Agents Chemother 57:674-6
Bowers et al. 2015 PLoS One 10:e0133727
Breurec et al. 2016 Emerg Infect Dis 22:529-31
Brisse et al. 2009 PLoS One 4:e4982
Brisse et al. 2014 Int J Syst Evol Microbiol 64:3146-3152
Broberg et al. 2013 Genome Announc 1:
Broberg et al. 2014 Genome Announc 2:
Cannatelli et al. 2013 Antimicrob Agents Chemother 57:5521-6
Cerqueira et al. 2017 Proc Natl Acad Sci U S A 114:1135-1140
Chang et al. 1996 Microb Pathog 20:255-61
Chen et al. 2004 Gene 337:189-98
Chen et al. 2013 Antimicrob Agents Chemother 57:1542-5
Chen et al. 2013 Antimicrob Agents Chemother 57:269-76
Chen et al. 2015 Genome Announc 3:
Chmelnitsky et al. 2012 J Bacteriol 194:6014
Comandatore et al. 2013 Genome Announc 1:
Comandatore et al. 2013 Genome Announc 1:
Conlan et al. 2014 Sci Transl Med 6:254ra126
Conte et al. 2017 Ecotoxicol Environ Saf 136:62-69
Daligault et al. 2014 Genome Announc 2:
Dautzenberg et al. 2014 Euro Surveill 19:
De Champs et al. 2005 J Clin Microbiol 43:5811-3
de Lorenzo 1984 Arch Microbiol 139:72-5
Decré et al. 2011 J Clin Microbiol 49:3012-4
Deleo et al. 2014 Proc Natl Acad Sci U S A 111:4988-93
Diancourt et al. 2005 J Clin Microbiol 43:4178-82
Doi et al. 2014 Antimicrob Agents Chemother 58:5947-53
Dolejska et al. 2013 Antimicrob Agents Chemother 57:1073-6
Fasciana et al. 2019 BMC Infect Dis 19:928
Favre-Bonte et al. 1999 Infect Immun 67:554-61
Fevre et al. 2011 PLoS Negl Trop Dis 5:e1052
Fouts et al. 2008 PLoS Genet 4:e1000141
Gaiarsa et al. 2015 Antimicrob Agents Chemother 59:389-96
Garcia-Fierro et al. 2022 J Antimicrob Chemother 77:1263-1271
Gomez-Simmonds et al. 2015 J Clin Microbiol 53:2060-7
Guo et al. 2014 BMC Genomics 15:589
Hazen et al. 2014 Antimicrob Agents Chemother 58:1879-88
Hennart et al. 2022 Mol Biol Evol 39:
Holt et al. 2015 Proc Natl Acad Sci U S A 112:E3574-81
Huynh et al. 2020 Gut Microbes 11:1287-1299
Izdebski et al. 2020 J Antimicrob Chemother 75:3156-3162
Johnson et al. 2014 Genome Announc 2:
Karaiskos et al. 2022 Expert Rev Anti Infect Ther 20:53-69
Kassis-Chikhani et al. 2013 Antimicrob Agents Chemother 57:618-20
Kumar et al. 2011 Antimicrob Agents Chemother 55:4267-76
Lee et al. 2012 J Bacteriol 194:5722-3
Lee et al. 2013 Genome Announc 1:
Leski et al. 2012 Int J Antimicrob Agents 40:282-4
Lester et al. 2011 Int J Antimicrob Agents 38:180-2
Liao et al. 2011 Emerg Infect Dis 17:1113-5
Liao et al. 2013 Genome Announc 1:
Liao et al. 2014 Eur J Clin Microbiol Infect Dis 33:365-9
Lin et al. 2011 BMC Microbiol 11:50
Lin et al. 2012 J Bacteriol 194:6316
Literacka et al. 2020 Antimicrob Agents Chemother 64:
Liu et al. 2012 J Bacteriol 194:1841-2
Lo et al. 2013 Antimicrob Agents Chemother 57:1561-2
Long et al. 2017 Genome Announc 5:
López-Camacho et al. 2014 J Antimicrob Chemother 69:632-6
Martin et al. 2016 mSphere 1:
Martin et al. 2021 Proc Natl Acad Sci U S A 118:
Melot et al. 2016 BMC Infect Dis 16:736
Miro et al. 2019 Front Microbiol 10:2961
Morris et al. 2012 J Antimicrob Chemother 67:2367-72
Munoz et al. 2006 J Dairy Sci 89:3425-30
Ogawa et al. 2005 Biol Pharm Bull 28:1505-8
Onori et al. 2015 J Clin Microbiol 53:2861-8
Pal et al. 2015 Funct Integr Genomics 15:63-76
Pinto-Tomás et al. 2009 Science 326:1120-3
Podschun et al. 1991 Zentralbl Hyg Umweltmed 192:279-85
Poirel et al. 2012 Antimicrob Agents Chemother 56:559-62
Pons et al. 2015 J Glob Antimicrob Resist 3:19-25
Pubmed id#23661476
Pubmed id#23661477
Raffelsberger et al. 2021 Gut Microbes 13:1939599
Ramirez et al. 2014 Genome Announc 2:
Ramos et al. 2014 BMC Genomics 15:54
Richard 1989 Bull Soc Pathol Exot Filiales 82:458-64
Rodrigues et al. 2014 J Antimicrob Chemother 69:274-5
Rodrigues et al. 2022 Microb Genom 8:
Rodrigues et al. 2022 Microbiol Spectr 10:e0237621
Rollin et al. 2022 Int J Infect Dis 114:185-191
Russo et al. 2013 Genome Announc 1:e0006513
Samuelsen et al. 2009 J Antimicrob Chemother 63:654-8
Samuelsen et al. 2011 Clin Microbiol Infect 17:1811-6
Samuelsen et al. 2011 J Antimicrob Chemother 66:670-2
Samuelsen et al. 2017 PLoS One 12:e0187832
Sands et al. 2021 Nat Microbiol 6:512-523
Shin et al. 2012 J Bacteriol 194:2736-7
Simon 1977 Can J Comp Med 41:166-8
Snitkin et al. 2012 Sci Transl Med 4:148ra116
Struve et al. 2015 mBio 6:e00630
Tao et al. 2012 J Bacteriol 194:4457-8
Tobes et al. 2013 Genome Announc 1:
Tofteland et al. 2013 PLoS One 8:e59015
van Duin et al. 2014 Antimicrob Agents Chemother 58:4035-41
van Westreenen et al. 2003 J Antimicrob Chemother 52:530-2
Villa et al. 2014 Antimicrob Agents Chemother 58:1707-12
Villa et al. 2017 Microb Genom 3:e000110
Wand et al. 2015 Antimicrob Agents Chemother 59:3966-72
Wang et al. 2013 Genome Announc 1:
Wendt et al. 2018 Gastroenterology 155:e18-e19
Wesselink et al. 2012 J Bacteriol 194:6981
Wright et al. 2014 Antimicrob Agents Chemother 58:4961-5
Wu et al. 2009 J Bacteriol 191:4492-501
Wylie et al. 2019 Front Cell Infect Microbiol 9:14
Xie et al. 2013 Genome Announc 1:
Xu et al. 2010 J Gen Appl Microbiol 56:241-7
Zadoks et al. 2011 J Dairy Sci 94:1045-51
Zhang et al. 2014 Genome Announc 2:
Zhou et al. 2022 Microbiol Spectr 10:e0237121

belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
GenEpi-Bio_DS_1
GenEpi-Bio_DS_2
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature