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25 records returned. Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
30389	SRR11819415	SAMN14967609	K. pneumoniae		0000	Human	Human	clinical			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	22441	0_0_127_5_5_0_1_0_0_0	Kp1	SL6	CG299
30441	SRR11819357	SAMN14967659	K. pneumoniae		0000	Human	Human	Surveillance			2	10	1	1	56	24	31	299	209258	Klebsiella pneumoniae	22489	0_0_127_5_1_1_0_0_0_0	Kp1	SL6	CG299			13	clb 3
30463	SRR11819328	SAMN14967501	K. pneumoniae		0000	Human	Human	clinical			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	22510	0_0_127_5_5_0_0_0_0_0	Kp1	SL6	CG299
30504	SRR11819282	SAMN14967569	K. pneumoniae		0000	Human	Human	clinical			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	22548	0_0_127_5_0_1_0_3_0_0	Kp1	SL6	CG299									289	ybt 17; ICEKp10
30803	SRR12508749	SAMN15868315	K. pneumoniae		0000	Human	Human	respiratory			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	22825	0_0_127_5_0_0_0_2_0_0	Kp1	SL6	CG299									289	ybt 17; ICEKp10
30807	SRR12508744	SAMN15868319	K. pneumoniae		0000	Human	Human	wound			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	22825,22829	0_0_127_5_0_0_0_2_0_0	Kp1	SL6	CG299									289	ybt 17; ICEKp10
30943	SRR12509107	SAMN15868439	K. pneumoniae		0000	Human	Human	urine			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	22548	0_0_127_5_0_1_0_3_0_0	Kp1	SL6	CG299									289	ybt 17; ICEKp10
31115	SRR12509446	SAMN15868666	K. pneumoniae		0000	Human	Human	blood			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	23127	0_0_127_5_0_1_0_2_0_0	Kp1	SL6	CG299
31336	SRR12653746	SAMN16182319	K. pneumoniae		0000	Human	Human	feces			2	10	1	1	56	24	31	299	19075	Klebsiella pneumoniae	23333	0_0_127_5_8_0_0_0_0_0	Kp1	SL6	CG299
31583	SRR12902639	SAMN16558121	K. pneumoniae		0000	Human	Human	urine			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	23559	0_0_127_5_0_0_0_1_0_0	Kp1	SL6	CG299									289	ybt 17; ICEKp10
31605	SRR12902587	SAMN16558075	K. pneumoniae		0000	Human	Human	vascular tissue			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	22510	0_0_127_5_5_0_0_0_0_0	Kp1	SL6	CG299
34775	SRR13181861	SAMN16981265	K. pneumoniae		0000	Human	Human	urine isolate			2	10	1	1	56	24	31	299	210097	Klebsiella pneumoniae	25749	0_0_127_5_0_2_0_0_0_0	Kp1	SL6	CG299
35376	SRR14402346	SAMN18977039	K. pneumoniae		0000	Human	Human	rectal			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	26215	0_0_127_5_2_1_0_0_0_0	Kp1	SL6	CG299
37227	SRR13086317	SAMN16823579	K. pneumoniae		0000	Human	Human	urine isolate			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	27513	0_0_127_5_7_0_0_0_0_0	Kp1	SL6	CG299
41682	SRR18212436	SAMN26398898	K. pneumoniae		0000	Human	Human	rectal swab			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	30632	0_0_127_5_0_1_0_4_0_0	Kp1	SL6	CG299
43016	SRR8199530	KLP00224; SAMN10435763	K. pneumoniae		0000	Human	Human	Unknown			187	10	1	1	56	24	31	6614	19023	Klebsiella pneumoniae	31668	0_0_127_5_4_0_0_0_0_0	Kp1	SL6	CG299
44412	SRR8738485	AS004855; SAMN11125745	K. pneumoniae		0000	Human	Human	Unknown			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	32782,33996	0_0_127_5_6_0_0_0_0_0	Kp1	SL6	CG299
44520	SRR8054571	KLPN_M84; SAMN10241293	K. pneumoniae		0000	Human	Human	Patient fluids			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	32859	0_0_127_5_1_0_0_1_0_0	Kp1	SL6	CG299
45516	SRR8071938	GCID_KLEBC_00165; SAMN06218107	K. pneumoniae		0000	Human	Human	Blood			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	33577	0_0_127_5_0_1_0_1_0_1	Kp1	SL6	CG299
46085	SRR8738403	AS006260; SAMN11125752	K. pneumoniae		0000	Human	Human	Unknown			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	33996	0_0_127_5_6_0_0_0_0_0	Kp1	SL6	CG299
46936	GCA_002180495.1	39383	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	247	0_0_127_5_0_1_0_0_0_0	Kp1	SL6	CG299									289	ybt 17; ICEKp10
47165	GCA_002181875.1	43420	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	468	0_0_127_5_0_0_0_0_0_0	Kp1	SL6	CG299									289	ybt 17; ICEKp10
48246	GCA_002935135.2	CRK0390	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	1366	0_0_127_5_0_1_0_0_1_0	Kp1	SL6	CG299
53548	GCA_002182145.1	42339	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	296	0_0_127_5_0_1_0_1_0_0	Kp1	SL6	CG299
53832	GCA_003860845.1	KLPN_M84	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	3233	0_0_127_5_1_0_0_0_0_0	Kp1	SL6	CG299			13	clb 3

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Abdelsalam et al. 2023 Microbiol Spectr 11:e0134423
Abe et al. 2021 J Antimicrob Chemother 76:3314-3317
Avgoulea et al. 2018 Antimicrob Agents Chemother 62:
Bialek-Davenet et al. 2013 Epidemiol Infect 141:188
Bialek-Davenet et al. 2014 Emerg Infect Dis 20:1812-20
Bialek-Davenet et al. 2015 J Antimicrob Chemother 70:81-8
Biedrzycka et al. 2021 J Antimicrob Chemother 76:2538-2545
Biedrzycka et al. 2022 J Antimicrob Chemother 77:3367-3375
Blin et al. 2017 Environ Microbiol 19:1881-1898
Bonnin et al. 2013 Antimicrob Agents Chemother 57:674-6
Bowers et al. 2015 PLoS One 10:e0133727
Breurec et al. 2016 Emerg Infect Dis 22:529-31
Brisse et al. 2009 PLoS One 4:e4982
Brisse et al. 2014 Int J Syst Evol Microbiol 64:3146-3152
Broberg et al. 2013 Genome Announc 1:
Broberg et al. 2014 Genome Announc 2:
Cannatelli et al. 2013 Antimicrob Agents Chemother 57:5521-6
Cerqueira et al. 2017 Proc Natl Acad Sci U S A 114:1135-1140
Chang et al. 1996 Microb Pathog 20:255-61
Chen et al. 2004 Gene 337:189-98
Chen et al. 2013 Antimicrob Agents Chemother 57:1542-5
Chen et al. 2013 Antimicrob Agents Chemother 57:269-76
Chen et al. 2015 Genome Announc 3:
Chmelnitsky et al. 2012 J Bacteriol 194:6014
Comandatore et al. 2013 Genome Announc 1:
Comandatore et al. 2013 Genome Announc 1:
Conlan et al. 2014 Sci Transl Med 6:254ra126
Conte et al. 2017 Ecotoxicol Environ Saf 136:62-69
Daligault et al. 2014 Genome Announc 2:
Dautzenberg et al. 2014 Euro Surveill 19:
De Champs et al. 2005 J Clin Microbiol 43:5811-3
de Lorenzo 1984 Arch Microbiol 139:72-5
Decré et al. 2011 J Clin Microbiol 49:3012-4
Deleo et al. 2014 Proc Natl Acad Sci U S A 111:4988-93
Diancourt et al. 2005 J Clin Microbiol 43:4178-82
Doi et al. 2014 Antimicrob Agents Chemother 58:5947-53
Dolejska et al. 2013 Antimicrob Agents Chemother 57:1073-6
Fasciana et al. 2019 BMC Infect Dis 19:928
Favre-Bonte et al. 1999 Infect Immun 67:554-61
Fevre et al. 2011 PLoS Negl Trop Dis 5:e1052
Fouts et al. 2008 PLoS Genet 4:e1000141
Gaiarsa et al. 2015 Antimicrob Agents Chemother 59:389-96
Garcia-Fierro et al. 2022 J Antimicrob Chemother 77:1263-1271
Gomez-Simmonds et al. 2015 J Clin Microbiol 53:2060-7
Guo et al. 2014 BMC Genomics 15:589
Hazen et al. 2014 Antimicrob Agents Chemother 58:1879-88
Hennart et al. 2022 Mol Biol Evol 39:
Holt et al. 2015 Proc Natl Acad Sci U S A 112:E3574-81
Huynh et al. 2020 Gut Microbes 11:1287-1299
Izdebski et al. 2020 J Antimicrob Chemother 75:3156-3162
Johnson et al. 2014 Genome Announc 2:
Karaiskos et al. 2022 Expert Rev Anti Infect Ther 20:53-69
Kassis-Chikhani et al. 2013 Antimicrob Agents Chemother 57:618-20
Kumar et al. 2011 Antimicrob Agents Chemother 55:4267-76
Lee et al. 2012 J Bacteriol 194:5722-3
Lee et al. 2013 Genome Announc 1:
Leski et al. 2012 Int J Antimicrob Agents 40:282-4
Lester et al. 2011 Int J Antimicrob Agents 38:180-2
Liao et al. 2011 Emerg Infect Dis 17:1113-5
Liao et al. 2013 Genome Announc 1:
Liao et al. 2014 Eur J Clin Microbiol Infect Dis 33:365-9
Lin et al. 2011 BMC Microbiol 11:50
Lin et al. 2012 J Bacteriol 194:6316
Literacka et al. 2020 Antimicrob Agents Chemother 64:
Liu et al. 2012 J Bacteriol 194:1841-2
Lo et al. 2013 Antimicrob Agents Chemother 57:1561-2
Long et al. 2017 Genome Announc 5:
López-Camacho et al. 2014 J Antimicrob Chemother 69:632-6
Martin et al. 2016 mSphere 1:
Martin et al. 2021 Proc Natl Acad Sci U S A 118:
Melot et al. 2016 BMC Infect Dis 16:736
Miro et al. 2019 Front Microbiol 10:2961
Morris et al. 2012 J Antimicrob Chemother 67:2367-72
Munoz et al. 2006 J Dairy Sci 89:3425-30
Ogawa et al. 2005 Biol Pharm Bull 28:1505-8
Onori et al. 2015 J Clin Microbiol 53:2861-8
Pal et al. 2015 Funct Integr Genomics 15:63-76
Pinto-Tomás et al. 2009 Science 326:1120-3
Podschun et al. 1991 Zentralbl Hyg Umweltmed 192:279-85
Poirel et al. 2012 Antimicrob Agents Chemother 56:559-62
Pons et al. 2015 J Glob Antimicrob Resist 3:19-25
Pubmed id#23661476
Pubmed id#23661477
Raffelsberger et al. 2021 Gut Microbes 13:1939599
Ramirez et al. 2014 Genome Announc 2:
Ramos et al. 2014 BMC Genomics 15:54
Richard 1989 Bull Soc Pathol Exot Filiales 82:458-64
Rodrigues et al. 2014 J Antimicrob Chemother 69:274-5
Rodrigues et al. 2022 Microb Genom 8:
Rodrigues et al. 2022 Microbiol Spectr 10:e0237621
Rollin et al. 2022 Int J Infect Dis 114:185-191
Russo et al. 2013 Genome Announc 1:e0006513
Samuelsen et al. 2009 J Antimicrob Chemother 63:654-8
Samuelsen et al. 2011 Clin Microbiol Infect 17:1811-6
Samuelsen et al. 2011 J Antimicrob Chemother 66:670-2
Samuelsen et al. 2017 PLoS One 12:e0187832
Sands et al. 2021 Nat Microbiol 6:512-523
Shin et al. 2012 J Bacteriol 194:2736-7
Simon 1977 Can J Comp Med 41:166-8
Snitkin et al. 2012 Sci Transl Med 4:148ra116
Struve et al. 2015 mBio 6:e00630
Tao et al. 2012 J Bacteriol 194:4457-8
Tobes et al. 2013 Genome Announc 1:
Tofteland et al. 2013 PLoS One 8:e59015
van Duin et al. 2014 Antimicrob Agents Chemother 58:4035-41
van Westreenen et al. 2003 J Antimicrob Chemother 52:530-2
Villa et al. 2014 Antimicrob Agents Chemother 58:1707-12
Villa et al. 2017 Microb Genom 3:e000110
Wand et al. 2015 Antimicrob Agents Chemother 59:3966-72
Wang et al. 2013 Genome Announc 1:
Wendt et al. 2018 Gastroenterology 155:e18-e19
Wesselink et al. 2012 J Bacteriol 194:6981
Wright et al. 2014 Antimicrob Agents Chemother 58:4961-5
Wu et al. 2009 J Bacteriol 191:4492-501
Wylie et al. 2019 Front Cell Infect Microbiol 9:14
Xie et al. 2013 Genome Announc 1:
Xu et al. 2010 J Gen Appl Microbiol 56:241-7
Zadoks et al. 2011 J Dairy Sci 94:1045-51
Zhang et al. 2014 Genome Announc 2:
Zhou et al. 2022 Microbiol Spectr 10:e0237121

belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
GenEpi-Bio_DS_1
GenEpi-Bio_DS_2
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature