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Allele designations/scheme field values
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Isolate count

105

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Genome count

105

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105 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
355	CIP 52.205	Aerogenes 4140; SB3237	K. pneumoniae	Kp1 (7 loci)	0000	Unknown	Unknown	Unknown		Antiserum	2	26	1	1	37	24	31	154	200339	Klebsiella pneumoniae	12858	0_0_127_12_0_0_0_0_0_0	Kp1	SL6	CG11598
12075	MVK-04F020		K. pneumoniae		0000		environment	chicken meat			2	10	1	1	14	3	20	6	43687	Klebsiella pneumoniae	5477	0_0_127_8_8_0_0_0_0_0	Kp1	SL6	CG6
12969	SPARK_1208_C1		K. pneumoniae		0000	Human	Human	Faeces			2	1	1	20	56	4	31	950	43390	Klebsiella pneumoniae	10282	0_0_127_10_1_0_1_0_0_0	Kp1	SL6	CG10691
12970	SPARK_1208_C2		K. pneumoniae		0000	Human	Human	Faeces			2	1	1	20	56	4	31	950	43390	Klebsiella pneumoniae	10282	0_0_127_10_1_0_1_0_0_0	Kp1	SL6	CG10691
13242	SPARK_1530_C1		K. pneumoniae		0000	Human	Human	Urine			2	10	1	1	14	3	20	6	43687	Klebsiella pneumoniae	10402	0_0_127_8_8_1_0_0_0_0	Kp1	SL6	CG6									376	ybt 14; ICEKp5
13559	SPARK_2063_C1		K. pneumoniae		0000	Human	Human	Faeces			2	10	1	1	14	3	20	6	210298	Klebsiella pneumoniae	10566	0_0_127_8_12_0_1_0_0_0	Kp1	SL6	CG6									376	ybt 14; ICEKp5
14016	SPARK_36_C2		K. pneumoniae		0000	Human	Human	Intestinal			2	10	1	1	14	3	20	6	43687	Klebsiella pneumoniae	10847	0_0_127_8_15_0_0_0_0_1	Kp1	SL6	CG6
14017	SPARK_36_C3		K. pneumoniae		0000	Human	Human	Intestinal			2	10	1	1	14	3	20	6	139374	Klebsiella pneumoniae	10848	0_0_127_8_15_0_0_0_0_0	Kp1	SL6	CG6
14137	SPARK_517_C1		K. pneumoniae		0000	Human	Human	Faeces			2	1	1	20	56	4	31	950	43390	Klebsiella pneumoniae	10925	0_0_127_10_2_0_0_0_0_0	Kp1	SL6	CG10691
14456	SPARK_976_C1		K. pneumoniae		0000	Human	Human	Urine			2	10	1	1	56	24	31	299			11085	0_0_127_2_1_0_0_1_0_0	Kp1	SL6	CG10246
21821	DE-MRI2		K. pneumoniae		0000	Other	milk	Milk Powder		Other	2	10	1	393	56	24	31	6014	95515	Klebsiella pneumoniae	16229	0_0_127_7_1_0_0_0_0_0	Kp1	SL6	CG10046
22167	657		K. pneumoniae		0000	Human	human	nose swab	colonisation		278	1	1	20	56	4	31	6142	43390	Klebsiella pneumoniae	16379	0_0_127_10_1_0_2_0_0_0	Kp1	SL6	CG10691
22907	NMI6860/12		K. pneumoniae			Human	human	rectal swab			2	10	1	1	56	24	31	299			16595	0_0_127_2_1_0_0_2_0_0	Kp1	SL6	CG10246
22999	NMI4838/16		K. pneumoniae			Human	human	BAL			2	10	1	1	14	3	91	908	44124	Klebsiella pneumoniae	16636	0_0_127_8_14_1_2_0_0_0	Kp1	SL6	CG6
24367	ERR4465134	SAMEA7190634	K. pneumoniae		0000	Human	Human	Unknown			2	10	1	1	56	24	31	299			17599	0_0_127_2_3_0_0_0_0_0	Kp1	SL6	CG10246
25009	DRR281048	SAMD00287374	K. pneumoniae		0000	Human	Human	Unknown			2	1	1	20	56	4	31	950	43390	Klebsiella pneumoniae	18130	0_0_127_10_5_0_0_0_0_0	Kp1	SL6	CG10691
26001	ERR4635182	15ars-mmh278; G18761206; SAMEA5758462	K. pneumoniae		0000	Human	Human	Blood			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	18939	0_0_127_1_2_0_0_0_0_0	Kp1	SL6	CG10015
26890	ERR3712708	RIVM_C012405; SAMEA6368315	K. pneumoniae		0000	Unknown	Unknown	Unknown			2	10	1	1	14	3	299	2496	139583	Klebsiella pneumoniae	19507	0_0_127_11_0_0_0_1_0_0	Kp1	SL6	CG10611
27354	ERR2303394	7; SAMEA104590234	K. pneumoniae		0000	Human	Human	Swab			2	1	1	20	56	4	31	950	43390	Klebsiella pneumoniae	19914	0_0_127_10_4_0_0_0_0_0	Kp1	SL6	CG10691
27382	ERR2303416	29; SAMEA104590256	K. pneumoniae		0000	Human	Human	Swab			2	1	1	20	56	4	31	950	43390	Klebsiella pneumoniae	19914	0_0_127_10_4_0_0_0_0_0	Kp1	SL6	CG10691
27811	ERR2303395	8; SAMEA104590235	K. pneumoniae		0000	Human	Human	Swab			2	1	1	20	56	4	31	950	43390	Klebsiella pneumoniae	19914	0_0_127_10_4_0_0_0_0_0	Kp1	SL6	CG10691
28310	ERR3712592	RIVM_C011441; SAMEA6368199	K. pneumoniae		0000	Unknown	Unknown	Unknown			2	10	1	1	14	3	299	2496	139583	Klebsiella pneumoniae	20670	0_0_127_11_0_0_0_1_1_0	Kp1	SL6	CG10611
28538	DRR065613	SAMD00055767	K. pneumoniae		0000	Human	Human	Unknown			2	10	1	1	56	24	31	299	19023	Klebsiella pneumoniae	20836	0_0_127_4_2_0_0_0_0_0	Kp1	SL6	CG10264
28670	ERR2303400	13; SAMEA104590240	K. pneumoniae		0000	Human	Human	Swab			2	1	1	20	56	4	31	950	43390	Klebsiella pneumoniae	19914	0_0_127_10_4_0_0_0_0_0	Kp1	SL6	CG10691
29512	ERR5863522	SAMEA8664743	K. pneumoniae		0000	Human	Human	blood			2	10	1	20	56	4	31	3829			21626	0_0_127_13_0_0_0_0_0_0	Kp1	SL6	CG12674

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belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
GenEpi-Bio_DS_1
GenEpi-Bio_DS_2
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature