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Isolate count

357

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Genome count

357

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357 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
1490	M49		K. pneumoniae		0000	Human	Human	Urine	UTIs		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	2889,2890	0_0_197_0_4_0_10_0_5_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
1493	M55		K. pneumoniae		0000	Human	Human	Endotracheal	Respiratory Tract Infection		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	2889,2890	0_0_197_0_4_0_10_0_5_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
3573	K68-73		K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Urine			3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	3145	0_0_197_0_4_10_0_0_0_0	Kp1	SL147	CG147
7130	NMI7435_16		K. pneumoniae	Kp1 (7 loci)	0000		human				3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	3936,8222,11093,11096,11097,11098,11099,11100,11101,11102,11104,18389,20367	0_0_197_0_4_0_2_4_0_0	Kp1	SL147	CG147									280	ybt 16; ICEKp12
7471	K1		K. pneumoniae	Kp1 (7 loci)	0000		human	blood culture			3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	3028	0_0_197_0_4_0_2_7_1_0	Kp1	SL147	CG147									280	ybt 16; ICEKp12
8691	DJ		K. pneumoniae		0000	Human	Human	Urine	UTI		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	1368,3917,8381,24676,24878,25013,28861,29374,32805	0_0_197_0_4_0_10_0_1_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10559	JHTS003		K. pneumoniae		0000	Human	Human	Sputum	hospital, ill patient		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	2889,2890	0_0_197_0_4_0_10_0_5_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10560	JHTS004		K. pneumoniae		0000	Human	Human	Respiratory	hospital, ill patient		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	2889,2890	0_0_197_0_4_0_10_0_5_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10561	JHTS008		K. pneumoniae		0000	Human	Human	Stool	hospital, ill patient		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	2890	0_0_197_0_4_0_10_0_5_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10562	JHTS009		K. pneumoniae		0000	Human	Human	Blood	hospital, ill patient		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	2889,2890	0_0_197_0_4_0_10_0_5_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10563	JHTS010		K. pneumoniae		0000	Human	Human	Blood	hospital, ill patient		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	2889,2890	0_0_197_0_4_0_10_0_5_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10564	JHTS011		K. pneumoniae		0000	Environment	Hospital	countertop	-		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	2889,2890	0_0_197_0_4_0_10_0_5_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10565	JHTS012		K. pneumoniae		0000	Environment	Hospital	countertop	-		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	2889,2890	0_0_197_0_4_0_10_0_5_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10566	SKGH01		K. pneumoniae		0000	Human	Human	Urine	UTI		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	3917	0_0_197_0_4_0_10_0_1_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10570	CRK0102		K. pneumoniae		0000	Human	Human	NA	NA		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	1311	0_0_197_0_4_0_10_4_0_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10571	DA48896		K. pneumoniae		0000	Human	Human	Tracheal	NA		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	1368,3917,8381,24676,24878,25013,28861,29374,32805	0_0_197_0_4_0_10_0_1_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10578	KP_063		K. pneumoniae		0000	Environment	Hospital	ICU alcohol foam dispenser	-		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	3248	0_0_197_0_4_0_14_0_0_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10579	KP_121		K. pneumoniae		0000	Environment	Hospital	ICU bedside rail	-		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	3274	0_0_197_0_4_0_10_0_3_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10580	KP_123		K. pneumoniae		0000	Environment	Hospital	ICU bedside light switch	-		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	3275	0_0_197_0_4_0_10_0_4_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10581	KP_158		K. pneumoniae		0000	Environment	Hospital	ICU bedside rail	-		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	3286	0_0_197_0_4_0_10_0_2_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10582	DJ_S11		K. pneumoniae		0000	Human	Human	Urine	UTI		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	1368,3917,8381,24676,24878,25013,28861,29374,32805	0_0_197_0_4_0_10_0_1_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10583	B35725		K. pneumoniae		0000	Human	Human	Blood	Bacteremia		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	738	0_0_197_0_4_0_10_3_0_0	Kp1	SL147	CG147
10584	CRK0103		K. pneumoniae		0000	Human	Human	NA	NA		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	1311	0_0_197_0_4_0_10_4_0_0	Kp1	SL147	CG147									384	ybt 10; ICEKp4
10585	CRKP-1215		K. pneumoniae		0000	Human	Human	Bronchial	NA		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	1367	0_0_197_0_4_0_10_1_0_0	Kp1	SL147	CG147
10586	CRKP-2297		K. pneumoniae		0000	Human	Human	Peritoneal	NA		3	4	6	1	7	4	38	147	19272	Klebsiella pneumoniae	1368	0_0_197_0_4_0_10_0_1_0	Kp1	SL147	CG147

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belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
GenEpi-Bio_DS_1
GenEpi-Bio_DS_2
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature