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Isolate count

143

0 [month]

Genome count

143

0 [month]

143 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
6	02A029	02A029; SB14	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood			2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9677	0_0_429_0_42_0_1_0_0_0	Kp1	SL23	CG23			68	clb 2					47	ybt 1; ICEKp10
17	12A041	12A041; SB42	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood			2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9678	0_0_429_0_61_0_0_0_0_0	Kp1	SL23	CG23	16	iuc 1	29	clb 2	31,161	rmp 1; KpVP-1	2	iro 1	340	ybt 1; ICEKp10
19	16A151	16A151; SB53	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood			2	1	1	1	9	4	12	23	43589	Klebsiella pneumoniae	9679	0_0_429_0_42_1_0_0_0_0	Kp1	SL23	CG23	1	iuc 1	68	clb 2	29	rmp 1; KpVP-1	2	iro 1	47	ybt 1; ICEKp10
373	IPEUC-1037	IPEUC-1037; SB3308	K. pneumoniae	Kp1 (7 loci)	0000	Animal	Horse	Horse			2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9683,9685,9692	0_0_429_0_44_1_1_0_1_0	Kp1	SL23	CG23	1	iuc 1	29	clb 2	26,38	rmp 1; KpVP-1	2	iro 1	47	ybt 1; ICEKp10
374	IPEUC-1056	IPEUC-1056; SB3309	K. pneumoniae	Kp1 (7 loci)	0000	Animal	Horse	Horse			2	1	1	1	9	4	12	23			9684	0_0_429_0_44_1_1_0_0_0	Kp1	SL23	CG23									334	ybt 1; ICEKp10
375	IPEUC-1570	IPEUC-1570; SB3310	K. pneumoniae	Kp1 (7 loci)	0000	Animal	Horse	Unknown	Metritis		2	1	1	1	9	4	12	23	43447	Klebsiella pneumoniae	9685	0_0_429_0_44_1_1_0_1_0	Kp1	SL23	CG23	1	iuc 1					2	iro 1	341	ybt 1; ICEKp10
383	Zaire1	Necker_Zaire1; SB3431	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Liver pus	Liver abscess		2	1	1	1	19	4	12	57	43601	Klebsiella pneumoniae	9688	0_0_429_0_63_0_0_0_0_0	Kp1	SL23	CG23	1	iuc 1			39	rmp 1; KpVP-1	2	iro 1
397	A5011	A5011; SB3927	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Liver pus	Liver abscess		2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9689	0_0_429_0_57_0_0_0_0_0	Kp1	SL23	CG23					26,38	rmp 1; KpVP-1	2	iro 1
398	NTUH-K2044	SB3928	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Liver pus	Liver abscess		2	1	1	1	9	4	12	23	18935	Klebsiella pneumoniae	6	0_0_429_0_24_0_0_0_0_0	Kp1	SL23	CG23	1	iuc 1			26,38	rmp 1; KpVP-1	19	iro 1	326	ybt 2; ICEKp1
1515	MET1_63/88063	MET1_63/88063; SB3380	K. pneumoniae	Kp1 (7 loci)	0000	Animal	Horse	Unknown	Metritis		2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9692	0_0_429_0_44_1_1_0_1_0	Kp1	SL23	CG23	1	iuc 1			26,38	rmp 1; KpVP-1	2	iro 1	334	ybt 1; ICEKp10
1516	SA2	SA2; SB4384	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood	Liver abscess	PCR	2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9693	0_0_429_0_58_0_0_0_0_0	Kp1	SL23	CG23	1	iuc 1	29	clb 2			2	iro 1	47	ybt 1; ICEKp10
1517	SA12	SA12; SB4385	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Liver pus	Liver abscess	PCR	2	1	1	1	9	4	12	23	179870	Klebsiella pneumoniae	9694	0_0_429_0_60_0_0_0_0_0	Kp1	SL23	CG23	1	iuc 1	29	clb 2	26,38	rmp 1; KpVP-1	2	iro 1	337	ybt 1; ICEKp10
1518	A18970	SB4446; YA	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Unknown	Liver abscess		2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9695	0_0_429_0_56_0_0_0_0_0	Kp1	SL23	CG23	1	iuc 1			37	rmp 3; ICEKp1			333	ybt 2; ICEKp1
1519	BJ-LI	SB4448	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood	Tibial abscess	PCR	2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9696	0_0_429_0_55_0_0_0_0_0	Kp1	SL23	CG23	1	iuc 1			26,38	rmp 1; KpVP-1	2	iro 1
1520	BP1011625	BP1011625; SB4467	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Unknown	Sepsis		2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9697	0_0_429_0_62_0_0_0_0_0	Kp1	SL23	CG23	1	iuc 1	29	clb 2	41	rmp 1; KpVP-1	2	iro 1	330	ybt 1; ICEKp10
1522	20479	20479; SB4698	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Unknown	Liver abscess		2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9698	0_0_429_0_5_1_0_0_0_0	Kp1	SL23	CG23					26,38	rmp 1; KpVP-1	2	iro 1	339	ybt 1; ICEKp10
1523	BG094	256; SB4720	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Pus			2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9699	0_0_429_0_62_1_0_0_0_1	Kp1	SL23	CG23	1	iuc 1	32	clb 2			2	iro 1	14	ybt 1; ICEKp10
1524	BG130	811197; SB4721	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Post-operative fluid			2	1	1	1	9	4	12	23	43833	Klebsiella pneumoniae	9700	0_0_429_0_4_12_0_0_0_0	Kp1	SL23	CG23	1	iuc 1	29	clb 2	40	rmp 1; KpVP-1	2	iro 1
1525	BG141	230; SB4722	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Pus			2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9701	0_0_429_0_62_1_0_0_0_0	Kp1	SL23	CG23	15	iuc 1	32	clb 2	34	rmp 1; KpVP-1	2	iro 1	14	ybt 1; ICEKp10
1636	1084		K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Unknown			2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	4004	0_0_429_0_18_0_0_0_0_0	Kp1	SL23	CG23			37	clb 2					47	ybt 1; ICEKp10
2888	07-0003m		K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood	Human_invasive		2	1	1	1	9	4	12	23			12964	0_0_429_0_70_0_0_0_0_0	Kp1	SL23	CG23							2	iro 1	47	ybt 1; ICEKp10
2897	08-475T		K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Cerebrospinal fluid	Human_invasive		2	1	1	1	9	4	12	23	43833	Klebsiella pneumoniae	9728	0_0_429_0_4_13_0_0_0_0	Kp1	SL23	CG23	1	iuc 1					2	iro 1	43	ybt 1; ICEKp10
2968	AJ155		K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Unknown	Human_infection		2	1	1	1	9	4	12	23	18955	Klebsiella pneumoniae	9746	0_0_429_0_5_0_1_0_0_0	Kp1	SL23	CG23	1	iuc 1	29	clb 2	26,38	rmp 1; KpVP-1	2	iro 1	47	ybt 1; ICEKp10
2997	DM11825_05		K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Liver	Human_invasive		2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	12989	0_0_429_0_44_4_0_0_0_0	Kp1	SL23	CG23	1	iuc 1	29	clb 2	26,38	rmp 1; KpVP-1	2	iro 1	47	ybt 1; ICEKp10
2998	DM16912_02		K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Liver	Human_invasive		2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	12990	0_0_429_0_44_1_3_0_0_0	Kp1	SL23	CG23	1	iuc 1	29	clb 2	26,38	rmp 1; KpVP-1	24	iro 1	54	ybt 1; ICEKp10

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belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
GenEpi-Bio_DS_1
GenEpi-Bio_DS_2
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature