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57 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
3008	EW-20-R-MAC-1		K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Intestinal	Human_carriage		4	1	1	1	21	1	35	76	18976	Klebsiella pneumoniae	9769	0_0_46_1_7_0_0_0_0_0	Kp1	SL76	CG76
3076	QMP_M1-378		K. pneumoniae	Kp1 (7 loci)	0000	Animal	Bovine	Faeces	Bovine_carriage		4	34	1	1	21	1	35	199	18976	Klebsiella pneumoniae	9809	0_0_46_6_0_0_0_2_0_0	Kp1	SL76	CG199
4575	SB5529	1264	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		4	1	1	1	12	1	35	1263	19391	Klebsiella pneumoniae	13225	0_0_46_9_2_0_0_0_0_0	Kp1	SL76	CG1263
4603	SB5557	1297	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		4	1	1	1	21	1	35	76	139291	Klebsiella pneumoniae	13239	0_0_46_5_5_0_0_0_0_0	Kp1	SL76	CG10052
4899	SB5659	a0321048; K291M	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		4	1	1	1	21	1	35	76	139336	Klebsiella pneumoniae	13314	0_0_46_1_8_0_0_0_0_0	Kp1	SL76	CG76
4927	SB5687	a0505156; K313M	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		4	1	1	1	1	1	6	2691	139319	Klebsiella pneumoniae	13334	0_0_46_20_1_0_0_0_0_0	Kp1	SL76	CG11565
4955	SB5715	a0609197; P294M	K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		4	1	1	1	21	1	35	76	139299	Klebsiella pneumoniae	13349	0_0_46_23_0_0_0_0_0_0	Kp1	SL76	CG11737
6205	SB5956		K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		4	1	1	1	21	1	35	76	139351	Klebsiella pneumoniae	13630	0_0_46_24_0_0_0_0_0_0	Kp1	SL76	CG11760
6207	SB5958		K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		162	1	1	1	21	1	35	3102			13631	0_0_46_22_0_0_0_0_0_0	Kp1	SL76	CG11761
6208	SB5959		K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		162	1	1	1	21	1	35	3102			13631	0_0_46_22_0_0_0_0_0_0	Kp1	SL76	CG11761
6303	SB5807		K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		4	1	1	1	12	1	35	1263	19391	Klebsiella pneumoniae	13697	0_0_46_9_3_0_0_0_0_0	Kp1	SL76	CG1263
6363	SB5867		K. pneumoniae	Kp1 (7 loci)	0000		pregnant woman	Fecal sample	carriage		4	1	11	1	21	1	446	3295	139361	Klebsiella pneumoniae	13743	0_0_659_1_0_0_0_0_0_0	Kp1	SL10645	CG11805
9529	SB6474	MVK-03E157	K. pneumoniae		0000	Environment	Environment	soil			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	8453	0_0_46_5_0_1_0_0_1_0	Kp1	SL76	CG10052
11764	84PK		K. pneumoniae		0000	Animal	Pig	Stool			4	1	1	1	1	272	35	4813	18976	Klebsiella pneumoniae	10083	0_0_46_16_0_0_0_0_0_0	Kp1	SL76	CG10949
12015	MVK-06F131		K. pneumoniae		0000		environment	chicken meat			4	1	1	1	21	1	352	4866	18976	Klebsiella pneumoniae	5427	0_0_46_11_0_0_0_0_0_0	Kp1	SL76	CG10337
13031	SPARK_1265_C2		K. pneumoniae		0000	Animal	Calf	Rectal swab			4	1	1	1	21	1	352	4866			10298	0_0_46_11_1_0_0_0_0_0	Kp1	SL76	CG10337
13133	SPARK_137_C1		K. pneumoniae		0000	Human	Human	Sputum			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	10338	0_0_46_5_4_0_0_0_0_0	Kp1	SL76	CG10052
13181	SPARK_1431_C1		K. pneumoniae		0000	Human	Human	Intestinal			4	1	1	1	21	1	35	76	58534	Klebsiella pneumoniae	10365	0_0_46_5_4_0_0_0_1_0	Kp1	SL76	CG10052
13431	SPARK_1871_C1		K. pneumoniae		0000	Animal	sow	Swab			4	1	1	1	21	1	6	490	200509	Klebsiella pneumoniae	10503	0_0_46_0_4_0_0_0_0_0	Kp1	SL76	CG490	25	iuc 3
13432	SPARK_1871_C2		K. pneumoniae		0000	Animal	sow	Swab			4	1	1	1	21	1	6	490	200509	Klebsiella pneumoniae	10503	0_0_46_0_4_0_0_0_0_0	Kp1	SL76	CG490	25	iuc 3
13469	SPARK_1923_C1		K. pneumoniae		0000	Animal	Pig	Rectal swab			4	1	1	1	21	1	6	490	200509	Klebsiella pneumoniae	10521	0_0_46_0_4_0_0_0_1_0	Kp1	SL76	CG490	25	iuc 3
13722	SPARK_240_C2		K. pneumoniae		0000	Animal	Cow	Rectal swab			4	1	1	1	7	1	6	103	200513	Klebsiella pneumoniae	10652	0_0_46_14_0_0_0_0_0_0	Kp1	SL76	CG11064
13857	SPARK_2697_C2		K. pneumoniae		0000	Animal	Dog	Rectal swab			4	1	1	1	21	1	35	76	210293	Klebsiella pneumoniae	10740	0_0_46_15_0_0_0_0_0_0	Kp1	SL76	CG11085
14537	EC0519	13DS021284	K. pneumoniae		0000	Human	Human	Intestinal			4	1	11	1	21	7	35	5202	200621	Klebsiella pneumoniae	11529	0_0_659_0_0_0_0_0_0_0	Kp1	SL10645	CG11259
14567	T7-106		K. pneumoniae		0000		Homo sapiens	Faeces			4	1	1	1	21	1	35	76	200514	Klebsiella pneumoniae	12084	0_0_46_19_0_0_0_0_0_0	Kp1	SL76	CG11471

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belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
GenEpi-Bio_DS_1
GenEpi-Bio_DS_2
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature