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Provenance fields
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16 records returned. Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
6704	ME170680		K. pneumoniae	Kp1 (7 loci)	0000	Unknown	Clinical specimen	Unknown			2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	9936	0_0_89_0_0_0_1_5_0_0	Kp1	SL870	CG870
12021	MVK-06F147		K. pneumoniae		0000		environment	chicken meat			2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	5433	0_0_89_0_5_0_0_0_0_0	Kp1	SL870	CG870
13345	SPARK_171_C1		K. pneumoniae		0000	Human	Human	Blood			2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	10459	0_0_89_0_7_0_1_0_0_0	Kp1	SL870	CG870
13622	SPARK_221_C2		K. pneumoniae		0000	Environment	Environment	Water			2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	10608	0_0_89_0_0_0_1_7_0_0	Kp1	SL870	CG870
13655	SPARK_2304_C1		K. pneumoniae		0000	Human	Human	Urine			2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	10628	0_0_89_0_0_0_6_0_0_0	Kp1	SL870	CG870
13906	SPARK_2838_C1		K. pneumoniae		0000	Animal	Dog	Faeces			2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	10787	0_0_89_0_0_0_1_6_0_0	Kp1	SL870	CG870
14908	T7-436		K. pneumoniae		0000		Homo sapiens	Faeces			2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	12529	0_0_89_0_9_0_0_0_0_0	Kp1	SL870	CG870
22143	Kp_8890		K. pneumoniae		0000	Human	Human	Blood	Bactermia	Full sequencing of CPS cluster	2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	16367	0_0_89_0_12_0_0_0_0_0	Kp1	SL870	CG870
48359	GCA_900507045.1	EuSCAPE_BE028	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	6	1	1	147	1	31	870	43437	Klebsiella pneumoniae	1472	0_0_89_0_1_1_0_0_0_0	Kp1	SL870	CG870
48789	GCA_900502355.1	EuSCAPE_GR145	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	1835	0_0_89_0_4_0_0_0_0_0	Kp1	SL870	CG870
48870	GCA_900505015.1	EuSCAPE_HR100	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	1898	0_0_89_0_1_0_0_0_0_0	Kp1	SL870	CG870
49220	GCA_900515825.1	EuSCAPE_IT312	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	2168	0_0_89_0_1_2_0_0_0_0	Kp1	SL870	CG870
49429	GCA_900502865.1	EuSCAPE_PT034	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	2307	0_0_89_0_0_0_1_0_0_0	Kp1	SL870	CG870
49471	GCA_900502145.1	EuSCAPE_PT089	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	2339	0_0_89_0_0_0_0_0_0_0	Kp1	SL870	CG870
50121	GCA_900498735.1		K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	2852	0_0_89_0_2_0_0_0_0_0	Kp1	SL870	CG870
51818	GCA_003977495.1	GCID_CRE_0018	K. pneumoniae	Kp1 (7 loci)		Unknown	Unknown	Unknown			2	6	1	1	147	1	31	870	43685	Klebsiella pneumoniae	4264	0_0_89_0_3_0_0_0_0_0	Kp1	SL870	CG870

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belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
GenEpi-Bio_DS_1
GenEpi-Bio_DS_2
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature