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Isolate count

13,437

1 [month]

Genome count

13,437

1 [month]

13,437 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields											MLST								Ribosomal MLST		scgMLST629_S					AbST		CbST		RmST		SmST		YbST
id	isolate	aliases	taxonomic designation	phylogroup from ST	QC status	source type	host	source details	infection	K typing method	gapA	infB	mdh	pgi	phoE	rpoB	tonB	ST	rST	species	scgST	LINcode	Phylogroup	Sublineage	Clonal group	ST	iuc lineage	ST	clb lineage	ST	rmp lineage	ST	iro lineage	ST	lineage ICE
6	02A029	02A029; SB14	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood			2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9677	0_0_429_0_42_0_1_0_0_0	Kp1	SL23	CG23			68	clb 2					47	ybt 1; ICEKp10
10	04A025	SB20	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood			1	1	1	1	1	1	1	15	95524	Klebsiella pneumoniae	1	0_0_0_0_0_0_0_0_0_0	Kp1	SL15	CG15
17	12A041	12A041; SB42	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood			2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9678	0_0_429_0_61_0_0_0_0_0	Kp1	SL23	CG23	16	iuc 1	29	clb 2	31,161	rmp 1; KpVP-1	2	iro 1	340	ybt 1; ICEKp10
19	16A151	16A151; SB53	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood			2	1	1	1	9	4	12	23	43589	Klebsiella pneumoniae	9679	0_0_429_0_42_1_0_0_0_0	Kp1	SL23	CG23	1	iuc 1	68	clb 2	29	rmp 1; KpVP-1	2	iro 1	47	ybt 1; ICEKp10
25	MGH 78578	ATCC 700721; SB107	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood	Pneumonia		2	1	2	1	2	2	2	38	18934	Klebsiella pneumoniae	2	0_0_184_0_2_0_0_0_0_0	Kp1	SL38	CG38
49	09A323	SB164	K. quasipneumoniae subsp. similipneumoniae	Kp4 (7 loci)	0000	Human	Human	Blood			18	22	26	63	85	20	51	414	43675	Klebsiella quasipneumoniae	3,16502	2_1_26_0_1_0_0_0_0_0	Kp4	SL421	CG421									564	ybt 10; ICEKp4
62	cur15505	SB2390	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Urinary tract		C-pattern	1	6	1	1	1	1	1	14	19208	Klebsiella pneumoniae	1186,1199	0_0_1_1_0_1_1_0_0_0	Kp1	SL14	CG14									106	ybt 10; ICEKp4
213	K45-67		K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Unknown			3	4	6	1	7	4	4	273	19272	Klebsiella pneumoniae	3108	0_0_197_0_0_0_0_0_0_0	Kp1	SL147	CG147
250	SB4-2	SB1067	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Faeces	Carriage		2	1	1	1	4	4	4	17	95521	Klebsiella pneumoniae	4	0_0_22_12_0_1_0_0_0_0	Kp1	SL17	CG1123
252	SB1139	SB1139	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Faeces	Carriage		2	9	2	1	13	1	16	37	19240	Klebsiella pneumoniae	5	0_0_109_17_0_0_0_0_0_0	Kp1	SL37	CG10076
262	SB1170	SB1170	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Faeces	Carriage		2	1	1	6	7	1	12	45	19210	Klebsiella pneumoniae	9118	0_0_158_8_18_0_1_0_0_0	Kp1	SL45	CG45									78	ybt 10; ICEKp4
302	VI9C3	SB2803; V9902406	K. pneumoniae	Kp1 (7 loci)	0000	Animal	Horse	Abdomen	Peritonitis		2	1	1	1	9	1	12	163	19302	Klebsiella pneumoniae	9680	0_0_158_22_0_0_0_0_0_0	Kp1	SL45	CG10815									376	ybt 14; ICEKp5
308	CIP 52.208	A 5054; SB3178	K. pneumoniae	Kp1 (7 loci)	0000	Unknown	Unknown	Unknown		Antiserum	2	6	1	1	4	1	33	82	19121	Klebsiella pneumoniae	12855	0_0_438_1_4_0_0_0_0_0	Kp1	SL82	CG82	29	iuc 2A
321	IPEUC-926	IPEUC-926; SB3193	K. pneumoniae	Kp1 (7 loci)	0000	Human	Human	Blood			2	6	1	1	4	1	33	82	200501	Klebsiella pneumoniae	9681	0_0_438_1_1_1_0_0_0_0	Kp1	SL82	CG82
325	CIP 52.204	ATCC 7380; SB3197	K. pneumoniae	Kp1 (7 loci)	0000	Unknown	Unknown	Unknown		C-pattern	9	4	2	1	1	1	27	86	19194	Klebsiella pneumoniae	9682	0_0_395_0_26_0_0_0_0_0	Kp1	SL86	CG86
333	CIP 52.210 T	CIP 52.210 T; SB3205	K. pneumoniae subsp. rhinoscleromatis	Kp1 (7 loci)	0000	Human	Human	Unknown			2	1	9	1	15	5	28	67	19234	Klebsiella pneumoniae	12856	0_0_443_0_1_0_0_0_0_0	Kp1	SL10032	CG10292	30	iuc 4			62	rmp 4; chromosomal			307	ybt 11; ICE_rhino
346	CIP 52.211 T	D 5050; SB3220	K. pneumoniae subsp. ozaenae	Kp1 (7 loci)	0000	Human	Human	Unknown		Antiserum	10	6	1	9	12	4	9	91	65780	Klebsiella pneumoniae	12857	0_0_439_0_0_0_0_0_1_0	Kp1	SL91	CG91	39	iuc 2A
355	CIP 52.205	Aerogenes 4140; SB3237	K. pneumoniae	Kp1 (7 loci)	0000	Unknown	Unknown	Unknown		Antiserum	2	26	1	1	37	24	31	154	200339	Klebsiella pneumoniae	12858	0_0_127_12_0_0_0_0_0_0	Kp1	SL6	CG11598
360	CIP 52.226	1996/49; SB3258	K. pneumoniae	Kp1 (7 loci)	0000	Unknown	Unknown	Unknown		Antiserum	22	1	1	1	3	4	1	155	19356	Klebsiella pneumoniae	12859	0_0_1015_0_0_0_0_0_0_0	Kp1	SL10887	CG11599
361	CIP 52.229	1680/49; SB3260	K. pneumoniae	Kp1 (7 loci)	0000	Unknown	Unknown	Unknown		Antiserum	2	12	1	1	16	4	25	59	127271	Klebsiella pneumoniae	12860	0_0_1091_0_0_0_0_0_0_0	Kp1	SL10888	CG11600
363	CIP 52.230	2002/49; SB3262	K. pneumoniae	Kp1 (7 loci)	0000	Unknown	Unknown	Unknown		Antiserum	4	5	1	12	22	1	10	47	200309	Klebsiella pneumoniae	12861	0_0_1147_0_0_0_0_0_1_0	Kp1	SL10889	CG11601
366	CIP 52.235	CIP 52.235; SB3269	K. pneumoniae	Mixed: Kp1 (6 loci), Kp4 (1 locus)	0100	Unknown	Unknown	Unknown		Antiserum	2	6	1	5	11	1	15	43	18960	Klebsiella pneumoniae	16530	0_0_83_6_0_0_0_0_0_0	Kp1	SL43	CG12447
370	CIP 53.12	CIP 53.12; SB3281	K. pneumoniae	Kp1 (7 loci)	0000	Unknown	Unknown	Unknown		Antiserum	4	1	5	1	7	5	23	171	18993	Klebsiella pneumoniae	12862	0_0_1146_0_0_0_0_0_0_0	Kp1	SL10890	CG11602
373	IPEUC-1037	IPEUC-1037; SB3308	K. pneumoniae	Kp1 (7 loci)	0000	Animal	Horse	Horse			2	1	1	1	9	4	12	23	19197	Klebsiella pneumoniae	9683,9685,9692	0_0_429_0_44_1_1_0_1_0	Kp1	SL23	CG23	1	iuc 1	29	clb 2	26,38	rmp 1; KpVP-1	2	iro 1	47	ybt 1; ICEKp10
374	IPEUC-1056	IPEUC-1056; SB3309	K. pneumoniae	Kp1 (7 loci)	0000	Animal	Horse	Horse			2	1	1	1	9	4	12	23			9684	0_0_429_0_44_1_1_0_0_0	Kp1	SL23	CG23									334	ybt 1; ICEKp10

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belonging to any project
not belonging to any project
Barbier et al_ApplEnvironMicrobiol_2020
Bialek et al 2014_EID
Biedrzycka et al 2021_JAC
BIRDY_Madagascar
Bowers et al 2015_PlosOne
CG258-TP
Dataset1_ST147_SARA_cours
Dataset2_CG147_SARA_cours
Ellington et al. 2019
Ezzat_2021
Garcia-Fierro et al 2022_JAC
GenEpi-Bio_DS_1
GenEpi-Bio_DS_2
Gorrie et al. 2017
Hennart_et_al_2022_full_collection
Hennart et al. 2022_MBE
Huynh et al 2020 Gut Microbes
Isolates Excluded (failed QC)
Isolates Exlcuded (contigs size)
Martin et al 2021_PNAS
Musicha et al. 2019
OkomoEtAl2020
Outbreaks
Plasmids
project_RI_JG_SB
Public isolates
published_genomes
Raffelsberger et al 2021_GutMicrobes
Rodrigues et al 2022_MGen
Rodrigues et al 2022_MSpectrum
Rollin et al 2022_IJID
SPARK project
ST258_ST512_ST1199
Test cg634 nomemclature