Export plugins
Export plugins - Jump to: Export | Contig export | Sequence Export
Export
Summary: Export dataset generated from query results
The Export plugin creates a download file of any primary metadata, secondary metadata, allele designations, scheme designations, or publications for isolates within a selected dataset or for the whole database. The output file is in Excel format.
Documentation bigsdb.readthedocs.io
Contig export
Summary: Analyse and export contigs selected from query results
This plugin enables the contigs associated with each isolate in a dataset to be downloaded in FASTA format. They can also be downloaded in batch mode as a TAR file. The contigs included in the download can be filtered based on the percentage of the sequence that has been tagged with a locus so that poorly annotated regions can be analysed specifically.
Documentation bigsdb.readthedocs.io
Sequence Export
Summary: Export concatenated allele sequences in XMFA and FASTA formats
This plugin creates concatenated XMFA and FASTA files of selected loci for a particular dataset. These sequences can optionally be aligned, using either MAFFT or MUSCLE, facilitating quick analysis of the outputs in third-party phylogenetic analysis packages.
Documentation bigsdb.readthedocs.io
