Full information on isolate Sch258 (id:223)

Projects

This isolate is a member of the following project:

Murik_2021
Genomic insights into the population structure and virulence of Kingella kingae: Infection of Kingella kingae in young children may result in a variety of clinical outcomes including skeletal infections, bacteremia and endocarditis. However, the factor determining the type and severity of the desease are not known. We used a comperative genomic approach in order to find genetic factors distigushing isolates taken from patients with different clinical outcomes, as well as asymptomatic carriers.

Provenance/primary metadata

id
223
taxonomic designation
K. kingae
isolate
Sch258
PFGE clone
t
penicillinase
Negative
isolation year
2010
country of isolation
Israel
city or region
South
laboratory source
SMC
sample origin
Pharynx
disease
Carrier
class of disease
Carrier
age in months
90 mo
gender
F
sender
Omer Murik, Infectious disease unit and Translational genomics laboratory, Shaare Zedek Medical Center, Jerusalem, Israel
curator
Auto Tagger
update history
2 updates show details
date entered
2021-11-25
datestamp
2021-11-25

Sequence bin

contigs
151
total length
1,985,480 bp
max length
159,736 bp
mean length
13,149 bp
N50
47,542
L50
12
N90
10,069
L90
44
N95
3,810
L95
61
loci tagged
6

Show sequence bin

Schemes and loci

MLST

abcZ (abcZ)
8  S 
adk (adk)
3  S 
aroE (aroE)
3  S 
cpn60 (cpn60)
3  S 
gdh (gdh)
3  S 
recA (recA)
3  S 
ST
18

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