Full information on isolate Sch258 (id:223)
Projects
This isolate is a member of the following project:
- Murik_2021
- Genomic insights into the population structure and virulence of Kingella kingae: Infection of Kingella kingae in young children may result in a variety of clinical outcomes including skeletal infections, bacteremia and endocarditis. However, the factor determining the type and severity of the desease are not known. We used a comperative genomic approach in order to find genetic factors distigushing isolates taken from patients with different clinical outcomes, as well as asymptomatic carriers.
Provenance/primary metadata
- id
- 223
- taxonomic designation
- K. kingae
- isolate
- Sch258
- PFGE clone
- t
- penicillinase
- Negative
- isolation year
- 2010
- country of isolation
- Israel
- city or region
- South
- laboratory source
- SMC
- sample origin
- Pharynx
- disease
- Carrier
- class of disease
- Carrier
- age in months
- 90 mo
- gender
- F
- sender
- Omer Murik, Infectious disease unit and Translational genomics laboratory, Shaare Zedek Medical Center, Jerusalem, Israel
- curator
- Auto Tagger
- update history
- 2 updates show details
- date entered
- 2021-11-25
- datestamp
- 2021-11-25
Sequence bin
- contigs
- 151
- total length
- 1,985,480 bp
- max length
- 159,736 bp
- mean length
- 13,149 bp
- N50
- 47,542
- L50
- 12
- N90
- 10,069
- L90
- 44
- N95
- 3,810
- L95
- 61
- %GC
- 46.63
- Ns
- 0
- gaps
- 0
- loci tagged
- 6
Schemes and loci
Tools
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