Full information on isolate Sch2108 (id:222)

Projects

This isolate is a member of the following project:

Murik_2021
Genomic insights into the population structure and virulence of Kingella kingae: Infection of Kingella kingae in young children may result in a variety of clinical outcomes including skeletal infections, bacteremia and endocarditis. However, the factor determining the type and severity of the desease are not known. We used a comperative genomic approach in order to find genetic factors distigushing isolates taken from patients with different clinical outcomes, as well as asymptomatic carriers.

Provenance/primary metadata

id
222
taxonomic designation
K. kingae
isolate
Sch2108
PFGE clone
M'
penicillinase
Negative
isolation year
2012
country of isolation
Israel
city or region
South
laboratory source
SMC
sample origin
Pharynx
disease
Carrier
class of disease
Carrier
age in months
123 mo
gender
F
sender
Omer Murik, Infectious disease unit and Translational genomics laboratory, Shaare Zedek Medical Center, Jerusalem, Israel
curator
Auto Tagger
update history
2 updates show details
date entered
2021-11-25
datestamp
2021-11-25

Sequence bin

contigs
122
total length
1,980,918 bp
max length
154,893 bp
mean length
16,238 bp
N50
64,958
L50
10
N90
13,083
L90
39
N95
4,591
L95
53
loci tagged
6

Show sequence bin

Schemes and loci

MLST

abcZ (abcZ)
2  S 
adk (adk)
2  S 
aroE (aroE)
8  S 
cpn60 (cpn60)
2  S 
gdh (gdh)
2  S 
recA (recA)
2  S 
ST
24

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