Full information on isolate Sch1614 (id:219)

Projects

This isolate is a member of the following project:

Murik_2021
Genomic insights into the population structure and virulence of Kingella kingae: Infection of Kingella kingae in young children may result in a variety of clinical outcomes including skeletal infections, bacteremia and endocarditis. However, the factor determining the type and severity of the desease are not known. We used a comperative genomic approach in order to find genetic factors distigushing isolates taken from patients with different clinical outcomes, as well as asymptomatic carriers.

Provenance/primary metadata

id
219
taxonomic designation
K. kingae
isolate
Sch1614
PFGE clone
J
penicillinase
Negative
isolation year
2012
country of isolation
Israel
city or region
South
laboratory source
SMC
sample origin
Pharynx
disease
Carrier
class of disease
Carrier
age in months
105 mo
gender
F
sender
Omer Murik, Infectious disease unit and Translational genomics laboratory, Shaare Zedek Medical Center, Jerusalem, Israel
curator
Auto Tagger
update history
2 updates show details
date entered
2021-11-25
datestamp
2021-11-25

Sequence bin

contigs
187
total length
1,941,408 bp
max length
109,231 bp
mean length
10,382 bp
N50
26,728
L50
21
N90
5,531
L90
74
N95
3,256
L95
96
loci tagged
6

Show sequence bin

Schemes and loci

MLST

abcZ (abcZ)
12  S 
adk (adk)
6  S 
aroE (aroE)
10  S 
cpn60 (cpn60)
3  S 
gdh (gdh)
9  S 
recA (recA)
2  S 
ST
27

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