Full information on isolate SAI11985 (id:218)

Projects

This isolate is a member of the following project:

Murik_2021
Genomic insights into the population structure and virulence of Kingella kingae: Infection of Kingella kingae in young children may result in a variety of clinical outcomes including skeletal infections, bacteremia and endocarditis. However, the factor determining the type and severity of the desease are not known. We used a comperative genomic approach in order to find genetic factors distigushing isolates taken from patients with different clinical outcomes, as well as asymptomatic carriers.

Provenance/primary metadata

id
218
taxonomic designation
K. kingae
isolate
SAI11985
PFGE clone
Unknown
penicillinase
Unknown
isolation year
2011
country of isolation
France
city or region
Paris
laboratory source
Unknown
sample origin
Unknown
disease
Osteoarthritis
class of disease
Osteoarthritis
age in months
Unknown
gender
Unknown
sender
Omer Murik, Infectious disease unit and Translational genomics laboratory, Shaare Zedek Medical Center, Jerusalem, Israel
curator
Auto Tagger
update history
2 updates show details
date entered
2021-11-25
datestamp
2021-11-25

Sequence bin

contigs
116
total length
1,958,888 bp
max length
189,889 bp
mean length
16,887 bp
N50
65,059
L50
10
N90
17,500
L90
36
N95
4,951
L95
48
loci tagged
6

Show sequence bin

Schemes and loci

MLST

abcZ (abcZ)
7  S 
adk (adk)
2  S 
aroE (aroE)
6  S 
cpn60 (cpn60)
2  S 
gdh (gdh)
13  S 
recA (recA)
2  S 
ST
26

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