Full information on isolate PER3 (id:216)

Projects

This isolate is a member of the following project:

Murik_2021
Genomic insights into the population structure and virulence of Kingella kingae: Infection of Kingella kingae in young children may result in a variety of clinical outcomes including skeletal infections, bacteremia and endocarditis. However, the factor determining the type and severity of the desease are not known. We used a comperative genomic approach in order to find genetic factors distigushing isolates taken from patients with different clinical outcomes, as well as asymptomatic carriers.

Provenance/primary metadata

id
216
taxonomic designation
K. kingae
isolate
PER3
PFGE clone
unique4
penicillinase
Unknown
isolation year
2010
country of isolation
Israel
city or region
South
laboratory source
SMC
sample origin
Pharynx
disease
Carrier
class of disease
Carrier
age in months
Child
gender
Unknown
sender
Omer Murik, Infectious disease unit and Translational genomics laboratory, Shaare Zedek Medical Center, Jerusalem, Israel
curator
Auto Tagger
update history
2 updates show details
date entered
2021-11-25
datestamp
2021-11-25

Sequence bin

contigs
140
total length
2,023,497 bp
max length
180,685 bp
mean length
14,454 bp
N50
44,789
L50
13
N90
10,361
L90
47
N95
4,644
L95
62
loci tagged
6

Show sequence bin

Schemes and loci

MLST

abcZ (abcZ)
11  S 
adk (adk)
2  S 
aroE (aroE)
3  S 
cpn60 (cpn60)
7  S 
gdh (gdh)
7  S 
recA (recA)
2  S 
ST
8

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