Full information on isolate PER2748 (id:215)

Projects

This isolate is a member of the following project:

Murik_2021
Genomic insights into the population structure and virulence of Kingella kingae: Infection of Kingella kingae in young children may result in a variety of clinical outcomes including skeletal infections, bacteremia and endocarditis. However, the factor determining the type and severity of the desease are not known. We used a comperative genomic approach in order to find genetic factors distigushing isolates taken from patients with different clinical outcomes, as well as asymptomatic carriers.

Provenance/primary metadata

id
215
taxonomic designation
K. kingae
isolate
PER2748
PFGE clone
unique3
penicillinase
Unknown
isolation year
2011
country of isolation
Israel
city or region
South
laboratory source
SMC
sample origin
Pharynx
disease
Carrier
class of disease
Carrier
age in months
Child
gender
Unknown
sender
Omer Murik, Infectious disease unit and Translational genomics laboratory, Shaare Zedek Medical Center, Jerusalem, Israel
curator
Auto Tagger
update history
2 updates show details
date entered
2021-11-25
datestamp
2021-11-25

Sequence bin

contigs
99
total length
1,900,494 bp
max length
178,709 bp
mean length
19,197 bp
N50
76,250
L50
9
N90
17,138
L90
33
N95
6,566
L95
41
loci tagged
6

Show sequence bin

Schemes and loci

MLST

abcZ (abcZ)
9  S 
adk (adk)
2  S 
aroE (aroE)
7  S 
cpn60 (cpn60)
3  S 
gdh (gdh)
4  S 
recA (recA)
3  S 
ST
28

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