Full information on isolate PER251 (id:214)

Projects

This isolate is a member of the following project:

Murik_2021
Genomic insights into the population structure and virulence of Kingella kingae: Infection of Kingella kingae in young children may result in a variety of clinical outcomes including skeletal infections, bacteremia and endocarditis. However, the factor determining the type and severity of the desease are not known. We used a comperative genomic approach in order to find genetic factors distigushing isolates taken from patients with different clinical outcomes, as well as asymptomatic carriers.

Provenance/primary metadata

id
214
taxonomic designation
K. kingae
isolate
PER251
PFGE clone
PP
penicillinase
Unknown
isolation year
2010
country of isolation
Israel
city or region
South
laboratory source
SMC
sample origin
Pharynx
disease
Carrier
class of disease
Carrier
age in months
Child
gender
Unknown
sender
Omer Murik, Infectious disease unit and Translational genomics laboratory, Shaare Zedek Medical Center, Jerusalem, Israel
curator
Auto Tagger
update history
2 updates show details
date entered
2021-11-25
datestamp
2021-11-25

Sequence bin

contigs
100
total length
1,952,083 bp
max length
191,856 bp
mean length
19,521 bp
N50
67,010
L50
9
N90
17,203
L90
32
N95
5,936
L95
42
loci tagged
6

Show sequence bin

Schemes and loci

MLST

abcZ (abcZ)
1  S 
adk (adk)
8  S 
aroE (aroE)
15  S 
cpn60 (cpn60)
8  S 
gdh (gdh)
19  S 
recA (recA)
3  S 
ST
58

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