Full information on isolate KK98 (id:210)

Projects

This isolate is a member of the following project:

Murik_2021
Genomic insights into the population structure and virulence of Kingella kingae: Infection of Kingella kingae in young children may result in a variety of clinical outcomes including skeletal infections, bacteremia and endocarditis. However, the factor determining the type and severity of the desease are not known. We used a comperative genomic approach in order to find genetic factors distigushing isolates taken from patients with different clinical outcomes, as well as asymptomatic carriers.

Provenance/primary metadata

id
210
taxonomic designation
K. kingae
isolate
KK98
PFGE clone
B
penicillinase
Negative
isolation year
1992
country of isolation
Israel
city or region
South
laboratory source
SMC
sample origin
Blood
disease
Bacteremia
class of disease
Bacteremia
age in months
10 mo
gender
M
sender
Omer Murik, Infectious disease unit and Translational genomics laboratory, Shaare Zedek Medical Center, Jerusalem, Israel
curator
Auto Tagger
update history
2 updates show details
date entered
2021-11-25
datestamp
2021-11-25

Sequence bin

contigs
129
total length
1,961,070 bp
max length
147,774 bp
mean length
15,203 bp
N50
43,109
L50
13
N90
9,977
L90
47
N95
4,913
L95
62
%GC
46.66
Ns
197
gaps
2
loci tagged
6

Show sequence bin

Schemes and loci

MLST

abcZ (abcZ)
4  S 
adk (adk)
2  S 
aroE (aroE)
2  S 
cpn60 (cpn60)
2  S 
gdh (gdh)
2  S 
recA (recA)
2  S 
ST
22

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