Full information on isolate KK416 (id:190)

Projects

This isolate is a member of the following project:

Murik_2021
Genomic insights into the population structure and virulence of Kingella kingae: Infection of Kingella kingae in young children may result in a variety of clinical outcomes including skeletal infections, bacteremia and endocarditis. However, the factor determining the type and severity of the desease are not known. We used a comperative genomic approach in order to find genetic factors distigushing isolates taken from patients with different clinical outcomes, as well as asymptomatic carriers.

Provenance/primary metadata

id
190
taxonomic designation
K. kingae
isolate
KK416
PFGE clone
M
penicillinase
Negative
isolation year
2011
country of isolation
Israel
city or region
East
laboratory source
SZ
sample origin
blood
disease
Endocarditis
class of disease
Endocarditis
age in months
Child
gender
?
sender
Omer Murik, Infectious disease unit and Translational genomics laboratory, Shaare Zedek Medical Center, Jerusalem, Israel
curator
Federica Palma, Institut Pasteur, Paris, France (E-mail: federica.palma@pasteur.fr)
update history
2 updates show details
date entered
2021-11-25
datestamp
2021-11-29

Sequence bin

contigs
142
total length
1,983,805 bp
max length
154,881 bp
mean length
13,971 bp
N50
67,314
L50
10
N90
12,782
L90
38
N95
4,886
L95
51
loci tagged
6

Show sequence bin

Schemes and loci

MLST

abcZ (abcZ)
2  S 
adk (adk)
2  S 
aroE (aroE)
8  S 
cpn60 (cpn60)
2  S 
gdh (gdh)
2  S 
recA (recA)
2  S 
ST
24

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