Full information on isolate F0228 (id:186)
Projects
This isolate is a member of the following project:
- Murik_2021
- Genomic insights into the population structure and virulence of Kingella kingae: Infection of Kingella kingae in young children may result in a variety of clinical outcomes including skeletal infections, bacteremia and endocarditis. However, the factor determining the type and severity of the desease are not known. We used a comperative genomic approach in order to find genetic factors distigushing isolates taken from patients with different clinical outcomes, as well as asymptomatic carriers.
Provenance/primary metadata
- id
- 186
- taxonomic designation
- K. kingae
- isolate
- F0228
- isolation year
- 2019
- country of isolation
- Israel
- city or region
- Unknown
- laboratory source
- Unknown
- sample origin
- Unknown
- disease
- Osteoarthritis
- class of disease
- Osteoarthritis
- sender
- Omer Murik, Infectious disease unit and Translational genomics laboratory, Shaare Zedek Medical Center, Jerusalem, Israel
- curator
- Federica Palma, Institut Pasteur, Paris, France (E-mail: federica.palma@pasteur.fr)
- update history
- 3 updates show details
- date entered
- 2021-11-25
- datestamp
- 2021-11-25
Sequence bin
- contigs
- 124
- total length
- 2,006,522 bp
- max length
- 167,241 bp
- mean length
- 16,182 bp
- N50
- 55,864
- L50
- 11
- N90
- 13,064
- L90
- 42
- N95
- 4,627
- L95
- 57
- %GC
- 46.63
- Ns
- 0
- gaps
- 0
- loci tagged
- 6
Schemes and loci
Tools
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