Full information on isolate B3892 (id:155)

Projects

This isolate is a member of the following project:

Murik_2021
Genomic insights into the population structure and virulence of Kingella kingae: Infection of Kingella kingae in young children may result in a variety of clinical outcomes including skeletal infections, bacteremia and endocarditis. However, the factor determining the type and severity of the desease are not known. We used a comperative genomic approach in order to find genetic factors distigushing isolates taken from patients with different clinical outcomes, as well as asymptomatic carriers.

Provenance/primary metadata

id
155
taxonomic designation
K. kingae
isolate
B3892
isolation year
2017
country of isolation
Israel
city or region
Unknown
laboratory source
Unknown
sample origin
Unknown
disease
Osteoarthritis
class of disease
Osteoarthritis
sender
Omer Murik, Infectious disease unit and Translational genomics laboratory, Shaare Zedek Medical Center, Jerusalem, Israel
curator
Federica Palma, Institut Pasteur, Paris, France (E-mail: federica.palma@pasteur.fr)
update history
3 updates show details
date entered
2021-11-25
datestamp
2021-11-25

Sequence bin

contigs
118
total length
2,006,917 bp
max length
167,202 bp
mean length
17,008 bp
N50
68,897
L50
10
N90
14,496
L90
38
N95
4,634
L95
52
loci tagged
6

Show sequence bin

Schemes and loci

MLST

abcZ (abcZ)
10  S 
adk (adk)
2  S 
aroE (aroE)
21  S 
cpn60 (cpn60)
2  S 
gdh (gdh)
2  S 
recA (recA)
2  S 
ST
75

Tools

Export:
Analysis: