Full information on isolate B0605 (id:147)

Projects

This isolate is a member of the following project:

Murik_2021
Genomic insights into the population structure and virulence of Kingella kingae: Infection of Kingella kingae in young children may result in a variety of clinical outcomes including skeletal infections, bacteremia and endocarditis. However, the factor determining the type and severity of the desease are not known. We used a comperative genomic approach in order to find genetic factors distigushing isolates taken from patients with different clinical outcomes, as well as asymptomatic carriers.

Provenance/primary metadata

id
147
taxonomic designation
K. kingae
isolate
B0605
isolation year
2019
country of isolation
Israel
city or region
Unknown
laboratory source
Unknown
sample origin
Unknown
disease
Osteoarthritis
class of disease
Osteoarthritis
sender
Omer Murik, Infectious disease unit and Translational genomics laboratory, Shaare Zedek Medical Center, Jerusalem, Israel
curator
Federica Palma, Institut Pasteur, Paris, France (E-mail: federica.palma@pasteur.fr)
update history
3 updates show details
date entered
2021-11-25
datestamp
2021-11-25

Sequence bin

contigs
170
total length
2,017,819 bp
max length
154,700 bp
mean length
11,870 bp
N50
42,281
L50
12
N90
8,826
L90
46
N95
3,876
L95
64
loci tagged
6

Show sequence bin

Schemes and loci

MLST

abcZ (abcZ)
10  S 
adk (adk)
2  S 
aroE (aroE)
21  S 
cpn60 (cpn60)
2  S 
gdh (gdh)
2  S 
recA (recA)
2  S 
ST
75

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