Sequence bin for 30SP

Contig summary statistics

Contigs
28
Total length
2,469,456
Minimum length
344
Maximum length
761,034
Mean length
88,195
N50
208,563
L50
3
N90
82,964
L90
10
N95
38,904
L95
13

FASTAEMBLGBKGFF3

SequenceSequencing methodOriginal designationLengthCommentsLocusStartEndDirectionAnnotation
128403Illumina30SP_contig_1 length 761034 coverage 425.3 normalized_cov 0.95761034SE1522 2392024024 EMBL GBK
SE1520 2535425914
SE1519 2608026451
SE1516 2781629039
SE1514 3015130654
SE1461 4180842284
SE1457 4655047458
SE1451 4907349438
SE1443 5307253923
SE1442 5426355756
SE1441 5619557238
SE1440 5723957877
SE1433 6338164334
SE1432 6444165655
SE1430 6838768698
SE1424 8536686775
SE1422 8800588805
SE1413 9658997902
SE1412 9797798468
SE1410 100204101295
SE1409 101551102540
SE1406 106011107276
SE1404 108985109608
SE1402 111386112510
BACT000004 (rpsD) 117000117602
SE1396 117000117602
SE1395 117634117750
SE1392 120443121591
SE1391 121591122814
x_7 122811123173
SE1389 123858124352
SE1384 127556128671
SE1381 130912131325
SE1380 131523132821
SE1373 141616143373
SE1369 148376149086
SE1361 156103157128
SE1358 159488160408
SE1356 163127164629
SE1354 165392165592
BACT000064 (rpmI) 165392165592
BACT000049 (rplT) 165642165998
SE1353 165642165998
SE1351 167045167968
SE1346 173216174028
SE1344 175040175720
SE1340 179517180077
SE1338 183060184325
SE1335 185960186139
BACT000050 (rplU) 188886189194
SE1329 189199189519
SE1328 189531189815
BACT000056 (rpmA) 189531189815
SE1326 191256191720
SE1325 191733192335
SE1322 194401195540
SE1321 195556195816
SE1317 200985201503
SE1314 204220204672
SE1313 204669205544
SE1308 211993212415
SE1306 214850215908
SE1305 216090217232
SE1300 224638224898
SE1298 225343225651
SE1296 226718227641
SE1295 227659228927
SE1284 236998237525
SE1279 240303240887
SE1278 240888241241
BACT000020 (rpsT) 248337248588
SE1270 250822251946
SE1269 252046253023
SE1268 253052253684
SE1264 257770258531
SE1263 258528259883
SE1262 260009260185
BACT000021 (rpsU) 260009260185
SE1261 261032261742
SE1257 264684265151
SE1254 265913266812
SE1247 274391275080
SE1246 275070276170
SE1241 280336280755
SE1240 281159281758
BACT000062 (rpmG) 284351284500
SE1234 286677286877
SE1228 290891291217
SE1227 291195291644
SE1224 292504293016
SE1217 298932299762
SE1213 301804302361
SE1207 307362308720
SE1206 308732309094
SE1204 309575310912
SE1203 310905311135
SE1198 316155317153
SE1197 317146318129
SE1194 320116321093
SE1192 322675324081
SE1190 326142327032
SE1187 329134330054
SE1183 333043333585
SE1182 333690334139
SE1179 335675336475
SE1172 341877342125
SE1171 342234343196
BACT000001 (rpsA) 349709350887
SE1163 351103352413
SE1160 353603353875
SE1158 354923355648
SE1156 356719357198
SE1147 364597364914
SE1142 371082372374
SE1141 372468373154
SE1137 376558377187
SE1135 377872378438
SE1134 378452378790
SE1133 379433380569
SE1125 418726418920
SE1124 418932419192
SE1115 425345425845
SE1114 425845426069
SE1111 428224428727
SE1110 428745429818
SE1095 447291447470
SE1094 447664448473
SE1092 448879449670
x_6 455425455733
SE1076 461262461984
SE1067 472178473053
SE1066 473060473707
SE1061 478184478960
SE1058 482650483903
SE1047 493274494362
SE1037 504780507182
SE1035 509383509991
SE1033 510580511047
SE1026 521583521810
SE1023 524631524864
BACT000014 (rpsN) 528150528419
BACT000062 (rpmG) 528586528735
SE1010 534756535820
SE1009 535826537106
SE0996 547357547554
SE0982 589428589667
SE0981 589621590619
SE0979 591779593452
SE0978 593629595128
SE0975 597024598961
SE0973 601795602289
SE0972 602313602678
SE0970 604567604857
SE0969 604914605531
SE0968 606125606991
SE0967 606992608752
SE0965 609822610037
SE0964 610126611685
SE0960 614726615307
SE0959 615336615728
SE0957 616728617432
SE0956 617429618718
SE0955 618718619989
SE0954 620019620732
BACT000015 (rpsO) 627675627944
SE0950 627675627944
SE0949 628063629034
SE0947 630105630455
SE0944 632923633240
SE0943 633240633524
SE0941 634787635254
SE0939 639994641697
SE0937 643235644017
SE0934 645583646305
BACT000002 (rpsB) 647476648264
SE0932 647476648264
SE0928 651437652327
SE0921 660777661640
BACT000048 (rplS) 667343667693
SE0916 667343667693
SE0915 667799668536
SE0914 668536669039
BACT000016 (rpsP) 669166669441
SE0911 671146671478
SE0901 683383685041
SE0900 685056685430
SE0899 685788685976
BACT000057 (rpmB) 685788685976
SE0898 686060686695
SE0894 690526691269
SE0893 691276692370
SE0890 694602695090
SE0889 695312695515
SE0885 699979700602
Fbe_SERP0775 700872702566
SE0883 702632703039
SE0882 703580703804
SE0879 705151708324
SE0878 708317709417
SE0877 709418710695
SE0873 713160713687
SE0865 722185722475
SE0862 723788724579
SE0858 729119730468
SE0857 730470731435
SE0854 734346735281
SE0853 735296735727
PSM-b1_SERP0738 739010739141
PSM-b1_SERP0738 739016739141
PSM-b1_SERP0738 739200739331
PSM-b1_SERP0738 739206739331
PSM-b2_SERP0737 739386739517
PSM-b3_SERP0736 739576739737
SE0845 740368740877
SE0840 745200745814
SE0838 748062748376
SE0835 752777753298
SE0834 753299753565
SE0832 754802757204
SE0831 757204758262
128416Illumina30SP_contig_2 length 297346 coverage 468.6 normalized_cov 1.04297346SE2126 28953602 EMBL GBK
SE2130 71398518
SE2132 980610870
SE2140 1541916279
SE2141 1627217090
SE2143 1843319137
SE2144 1924920913
SE2156 3210432994
SE2160 3697239599
SE2162 4188442330
SE2165 4341945137
SE2168 4787249494
SE2170 4991651250
SE2171 5157752113
SE2173 5427954584
SE2174 5493655535
SE2210 112190113839
SE2225 130625131413
x_15 135083135271
SE2229 136320137270
SE2233 145344145772
SE2243 151795153303
SE2253 159202160017
SE2254 160014160814
SE2255 160816161589
SE2258 164541166076
SE0271 176264176878
SE0262 185227186189
SE0259 187777189387
SE0254 192668193621
SE0249 199123199626
SE0247 201573202976
SE0244 205752206375
SE0237 219965220540
SE0234 222981223946
SE0230 225764225988
SE0219 236269237171
SE0216 240015241232
SE0210 246344247093
SE0197 260047260820
SE0183 276169276492
128401Illumina30SP_contig_3 length 208563 coverage 474.4 normalized_cov 1.06208563SE2315 1365314438 EMBL GBK
SE2316 1495015336
SE2321 2019320852
SE2328 2693027658
x_16 2868728935
SE2330 2897729345
PSM-a_SERP0083 3413334198
PSM-d_SERP0082 3424634356
SE2334 3460734870
SE2348 4459546061
SE2349 4609947367
SE2351 4854248949
SE2352 4907749742
SE2354 5108052468
SE2357 5470655275
SE2358 5529056813
SE2365 5924859913
SE2368 6082961089
BACT000018 (rpsR) 6680467046
BACT000006 (rpsF) 6762367919
SE2372 6762367919
SE2373 6830469113
SE2374 6918769378
ychF 6957270669
SE2377 7090571780
SE2378 7193472776
SE2379 7350574608
SE2382 7756979815
SE2384 8079881982
SE2399 9179992200
SE2402 9514695337
SE2405 9846199657
SE2411 103803104198
SE2418 110051110398
SE2419 110557110694
BACT000063 (rpmH) 110557110694
SE0002 113111114244
x_1 114677114913
SE0003 114910116025
SE0007 122759124045
BACT000038 (rplI) 131365131811
SE0014 131365131811
SE0022 141280142080
mecA 150689152695
SE0156 196029197009
128406Illumina30SP_contig_4 length 199490 coverage 470.8 normalized_cov 1.05199490SE0284 50395500 EMBL GBK
SE0285 55216084
SE0286 60747081
SE0291 1500115642
SE0292 1562617026
SE0293 1701917417
SE0294 1740718174
SE0295 1817118698
BACT000062 (rpmG) 1946719610
SE0298 1967319855
SE0299 1986620414
BACT000040 (rplK) 2074421166
SE0301 2138022075
BACT000030 (rplA) 2138022075
SE0303 2235022850
BACT000039 (rplJ) 2235022850
SE0304 2288823256
BACT000036 (rplL) 2288823256
SE0307 2795531578
SE0308 3190632166
BACT000012 (rpsL) 3225732670
BACT000007 (rpsG) 3274133211
SE0310 3274133211
fusA 3333135412
SE0312 3563136815
SE0318 4232743403
SE0325 5074151403
SE0337 6196762845
SE0338 6285963524
SE0342 6567466222
SE0347 6958669948
SE0348 6995270212
SE0359 8102782016
SE0361 8354884468
SE0362 8447385456
SE0363 8546986545
SE0369 9726998567
SE0370 9862499130
SE0373 101192102028
SE0374 102039103307
SE0384 110900111844
SE0386 112609113406
SE0388 114365115084
SE0395 119600119824
SE0396 119840120046
SE0401 125396125878
SE0405 129830130759
SE0406 130756131592
SE0410 134151134945
SE0418 140845142572
SE0424 149031150083
SE0425 150628151134
SE0426 151243152166
SE0427 152185152859
SE0429 154037154798
SE0433 159009159809
SE0437 164044164760
SE0438 164760165236
SE0439 165488166162
SE0441 167499167684
SE0442 167973168572
SE0448 173008173304
SE0450 174297174863
SE0454 176959177831
SE0459 182272183198
SE0471 192815193735
128395Illumina30SP_contig_5 length 195125 coverage 455.5 normalized_cov 1.02195125SE2117 59176786 EMBL GBK
SE2116 72918835
SE2110 1328514451
SE2107 1674316958
SE2105 1834418736
SE2104 1873319422
SE2103 1947221211
SE2093 2913830295
SE2092 3029730749
SE2090 3182131997
SE2089 3200033604
SE2076 4337543986
SE2066 5400955058
SE2063 5741659380
SE2062 5955460168
SE2061 6027661274
SE2060 6127662043
SE2059 6204562245
SE2055 6603966329
SE2053 6848268895
SE2046 7553476214
SE2045 7623777778
SE2038 8754187732
SE2032 9480895626
SE2031 9581896006
SE2024 102056102832
SE2013 114928115386
SE2010 118459119859
SE1996 135383136270
SE1995 136544137230
SE1993 137737138525
SE1977 152394152708
SE1973 159006159608
SE1971 160298160750
x_14 166924167280
SE1952 178186178602
SE1951 178671179072
SE1950 179136180128
SE1948 181182183347
SE1941 192537193211
128393Illumina30SP_contig_6 length 170360 coverage 440.1 normalized_cov 0.98170360SE0677 6201561 EMBL GBK
SE0685 924610235
SE0690 1312414932
SE0692 1621616659
SE0694 1753817885
SE0695 1790218537
SE0697 1935720211
SE0713 5264053758
x_4 5324753555
SE0716 5562456817
SE0717 5679557970
SE0718 5849059974
SE0719 5996460209
SE0726 6804168643
SE0727 6864968834
SE0729 7010370321
SE0744 7957581248
AtlE_SERP0636 8634490348
SE0756 9657596865
SE0757 9686297467
SE0758 9745799445
SE0759 99445100569
SE0760 101106101423
SE0761 101797102657
SE0762 102862103344
SE0763 103331104458
SE0764 104459105163
SE0765 105163105423
SE0766 105425106096
SE0767 106089108278
SE0769 109734110765
SE0770 110765111331
SE0771 111348112826
SE0774 115026116429
SE0777 119736119870
SE0778 120022121314
SE0779 121622122794
SE0780 122854123393
SE0781 123549123815
SE0788 131979132197
SE0793 136386137687
x_5 136724137059
SE0794 137692139098
SE0796 139827140366
SE0797 140378141472
SE0800 143083144156
SE0804 147979148590
SE0806 150163150354
SE0810 152560153042
SE0811 153187153462
SE0816 161230161691
SE0817 162131163183
SE0818 163204163638
SE0822 165570165959
SE0823 166026166568
SE0826 168723169277
BACT000061 (rpmF) 169355169528
128397Illumina30SP_contig_7 length 118503 coverage 434.9 normalized_cov 0.97118503SE1661 15642133 EMBL GBK
SE1656 72447477
x_9 94029659
x_8 1012510466
SE1652 1184512507
SE1651 1248012941
SE1649 1404315659
SE1648 1600117935
SE1647 1828218917
SE1645 2052920753
SE1640 2377125243
Hld_SERP1489 2935029424
Hld_SERP1489 2935229423
SdrH_SERP1487 3094432398
SE1625 4756847945
SE1624 4794548859
SE1596 6619767024
SE1595 6709967725
SE1594 6769767888
SE1593 6829969594
SE1592 6971970021
SE1591 7034571037
SE1589 7322775224
SE1586 7869378995
SE1585 7899780454
SE1579 8662987183
SE1576 8941090135
SE1575 9057691112
SE1571 9373894439
SE1570 9443695482
SE1569 9547296101
SE1567 9774298026
SE1566 9803498498
SE1565 9864098855
SE1562 100845101987
SE1561 102146102307
SE1553 108258109232
SE1552 109412110455
SE1551 110562111104
SE1550 111346113082
SE1549 113233114327
SE1548 114634115923
128396Illumina30SP_contig_8 length 102217 coverage 470.0 normalized_cov 1.05102217SE0563 44854718 EMBL GBK
SE0562 47875245
SE0561 54116715
SE0559 83749135
SE0558 926610456
SE0557 1065111661
SE0556 1171412727
SE0555 1308113317
SE0553 1497715876
SE0551 1752618110
SE0550 1843819382
SE0548 2050821416
SE0547 2159222524
SE0545 2400424540
SE0544 2453725376
SE0543 2538226314
SE0538 3228932930
SE0535 3569838232
SE0530 4261543256
SE0528 4473145807
SE0526 4678047274
SE0524 4862549755
SE0519 5310053414
SE0517 5468955468
SE0512 6079761195
SE0511 6194862823
SE0505 6974670285
SE0503 7166573179
SE0501 7434776128
SE0493 8271983723
SE0492 8371184442
SE0491 8446184667
SE0490 8471685324
SE0488 8646787054
SE0487 8735088021
SE0485 8844689159
SE0480 9145891931
SE0477 9371994825
SE0473 9769598867
128411Illumina30SP_contig_9 length 95510 coverage 446.4 normalized_cov 0.9995510SE1869 33333656 EMBL GBK
SE1867 45105346
SE1866 53465960
SE1865 59736662
SE1863 71218836
SE1861 92549556
SE1856 1366214210
SE1851 1693817609
SE1846 2046921728
SE1845 2172522201
SE1843 2265122884
SE1835 2845229702
SE1831 3391534823
SE1827 3925040584
SE1825 4139541703
BACT000010 (rpsJ) 4139541703
BACT000032 (rplC) 4173142393
BACT000033 (rplD) 4242243045
BACT000052 (rplW) 4304543320
SE1821 4334944182
BACT000031 (rplB) 4334944182
BACT000019 (rpsS) 4424944527
SE1820 4424944527
BACT000051 (rplV) 4455544908
SE1818 4493245585
BACT000003 (rpsC) 4493245585
BACT000045 (rplP) 4558846022
SE1817 4558846022
SE1816 4601246221
BACT000058 (rpmC) 4601246221
BACT000017 (rpsQ) 4624646509
SE1815 4624646509
SE1813 4653346955
SE1814 4654046908
BACT000043 (rplN) 4654046908
SE1812 4695047267
BACT000053 (rplX) 4695047267
BACT000034 (rplE) 4729347832
SE1811 4729347832
BACT000014 (rpsN) 4785548040
SE1810 4785548040
SE1809 4807148469
BACT000008 (rpsH) 4807148469
SE1808 4849449030
BACT000035 (rplF) 4849449030
BACT000047 (rplR) 4906249424
SE1807 4906249424
SE1806 4944549945
BACT000005 (rpsE) 4944549945
BACT000059 (rpmD) 4996250141
BACT000044 (rplO) 5015850598
SE1804 5015850598
SE1802 5190852555
SE1801 5274452962
BACT000065 (rpmJ) 5299453107
SE1800 5299453107
SE1799 5313053495
BACT000013 (rpsM) 5313053495
BACT000011 (rpsK) 5351853907
SE1798 5351853907
BACT000046 (rplQ) 5494555313
SE1796 5494555313
SE1795 5560856453
SE1793 5730058106
SE1792 5811058913
BACT000042 (rplM) 5917359610
SE1790 5963060022
BACT000009 (rpsI) 5963060022
SE1787 6243162859
SE1785 6340264334
SE1784 6433865315
SE1778 7120772211
SE1775 7466474903
SE1774 7497775477
SE1772 7553877499
SE1771 7760278783
x_11 8178282180
SE1764 8664886962
SE1763 8711387373
SE1759 9024391580
SE1757 9251293951
128391Illumina30SP_contig_10 length 82964 coverage 443.8 normalized_cov 0.9982964SE1747 1017911150 EMBL GBK
SE1739 1591716327
SE1738 1651416960
SE1737 1708517795
SE1736 1800218664
SE1728 2584226639
SE1725 2878630393
SE1723 3136032220
BACT000060 (rpmE) 3742137678
SE1710 4274643984
SE1707 4596546315
SE1706 4634147069
SE1705 4711247324
SE1703 4793748476
SE1702 4849950010
SE1701 5009750963
SE1700 5098552397
SE1699 5241752821
x_10 5297053203
SE1696 5536755807
SE1694 5678157440
SE1692 5840659227
SE1688 6172062373
SE1686 6421364506
SE1682 6510166312
SE1679 6944170970
SE1673 7540075570
SE1671 7627577276
SE1670 7737677702
128404Illumina30SP_contig_11 length 62467 coverage 451.3 normalized_cov 1.0162467SE1874 19082978 EMBL GBK
SE1878 51355452
Fdh_A0A0E2N198 980212750
SE1885 1560916298
SE1888 1779418846
SE1889 1884319730
SE1902 3008631387
SE1907 3577536710
SE1908 3695838106
x_12 3775738113
SE1911 3907039762
SE1921 4671947279
SE1923 4727647596
SE1930 5354754179
x_13 5485855118
128414Illumina30SP_contig_12 length 46817 coverage 456.2 normalized_cov 1.0246817SE0575 1277712971 EMBL GBK
PSM-e 1597316044
SE0584 2038820576
x_3 2060120858
SE0593 2504925591
SE0596 2676227142
SE0599 2778128077
SE0601 2934930044
SE0602 3006530877
SE0604 3148031671
SE0607 3377435081
SE0608 3514936390
SE0609 3638036844
SE0613 3999241017
SE0617 4530946223
128409Illumina30SP_contig_13 length 38904 coverage 483.1 normalized_cov 1.0838904SE2299 36594585 EMBL GBK
SE2298 45875390
SE2297 54075754
SE2295 65666814
SE2292 986210635
SE2291 1084211387
SE2290 1138812278
SE2289 1237812641
SE2288 1303613884
SE2286 1474515125
SE2285 1518515493
SE2284 1610417459
SE2283 1760418569
SE2282 1873919398
SE2281 1965120223
SE2280 2022023729
SE2278 2525726447
SE2277 2644426707
SE2276 2673127132
SE2275 2722627627
SE2273 2920329742
SE2271 3237433255
SE2268 3561635981
SE2267 3598236461
128402Illumina30SP_contig_14 length 29726 coverage 443.9 normalized_cov 0.9929726SE0654 461290 EMBL GBK
SE0649 43714751
SE0648 52165809
SE0647 58756255
SE0645 88479275
SE0644 92759622
SE0642 1110711586
SE0641 1158611879
SE0640 1185712213
SE0638 1380614180
SE0634 1898519344
SE0631 2116321483
SE0626 2335323589
SE0624 2481826275
SE0623 2629126437
SE0620 2863429068
SE0619 2918729453
128408 Illumina 30SP_contig_15 length 18720 coverage 1391.6 normalized_cov 3.10 18720
128405Illumina30SP_contig_16 length 17578 coverage 459.5 normalized_cov 1.0217578SE0662 91939768 EMBL GBK
SE0660 978710308
128415 Illumina 30SP_contig_17 length 7802 coverage 455.6 normalized_cov 1.02 7802
128398 Illumina 30SP_contig_18 length 4439 coverage 4880.5 normalized_cov 10.88 4439
128413 Illumina 30SP_contig_19 length 3117 coverage 2102.9 normalized_cov 4.69 3117
128400 Illumina 30SP_contig_20 length 2087 coverage 2264.1 normalized_cov 5.05 2087
128410 Illumina 30SP_contig_21 length 1833 coverage 3235.1 normalized_cov 7.21 1833
128392 Illumina 30SP_contig_22 length 1496 coverage 1967.8 normalized_cov 4.39 1496
128417 Illumina 30SP_contig_23 length 791 coverage 685.1 normalized_cov 1.53 791
128412 Illumina 30SP_contig_24 length 693 coverage 561.4 normalized_cov 1.25 693
128394 Illumina 30SP_contig_25 length 693 coverage 741.3 normalized_cov 1.65 693
128407 Illumina 30SP_contig_26 length 490 coverage 313.4 normalized_cov 0.70 490
128390 Illumina 30SP_contig_27 length 347 coverage 4797.8 normalized_cov 10.69 347
128399 Illumina 30SP_contig_28 length 344 coverage 197.1 normalized_cov 0.44 344